Strain Fitness in Pseudomonas putida KT2440 around PP_0948

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,091,565	+				+1.4
1,091,565	+				+0.4
1,091,689	+				-0.4
1,091,690	-				+1.1
1,091,690	-				+0.6
1,091,745	+		PP_0947	0.14	-0.6
1,091,746	-		PP_0947	0.14	-0.3
1,091,842	+		PP_0947	0.25	+0.4
1,091,843	-		PP_0947	0.25	-0.4
1,091,863	+		PP_0947	0.27	-0.5
1,092,036	+		PP_0947	0.46	-0.2
1,092,036	+		PP_0947	0.46	+0.2
1,092,145	+		PP_0947	0.58	-0.3
1,092,145	+		PP_0947	0.58	-0.4
1,092,145	+		PP_0947	0.58	-0.4
1,092,481	+				+0.1
1,092,511	+				-0.2
1,092,555	+				+0.8
1,092,556	-				+0.9
1,092,728	+		PP_0948	0.64	+0.5
1,092,918	+				-3.1
1,092,918	+				+1.0
1,092,918	+				-0.5
1,092,918	+				-1.4
1,092,918	+				-1.2
1,092,963	-		PP_0949	0.14	-0.7
1,092,963	-		PP_0949	0.14	-0.1
1,092,963	-		PP_0949	0.14	-1.0
1,092,963	-		PP_0949	0.14	-0.4
1,092,963	-		PP_0949	0.14	-2.4
1,092,966	+		PP_0949	0.14	-0.5
1,093,011	+		PP_0949	0.19	-0.1
1,093,012	-		PP_0949	0.20	-1.3
1,093,012	-		PP_0949	0.20	-0.8
1,093,012	-		PP_0949	0.20	+1.5
1,093,029	+		PP_0949	0.22	+0.7
1,093,029	+		PP_0949	0.22	-0.3
1,093,029	+		PP_0949	0.22	+0.6
1,093,030	-		PP_0949	0.22	-1.4
1,093,030	-		PP_0949	0.22	-0.9
1,093,030	-		PP_0949	0.22	-1.3
1,093,030	-		PP_0949	0.22	-1.1
1,093,030	-		PP_0949	0.22	-2.5
1,093,030	-		PP_0949	0.22	-1.0
1,093,033	+		PP_0949	0.22	+0.4
1,093,033	+		PP_0949	0.22	-2.6
1,093,034	-		PP_0949	0.22	-0.0
1,093,062	+		PP_0949	0.25	+1.4
1,093,434	+		PP_0949	0.69	+1.3
1,093,434	+		PP_0949	0.69	-0.9
1,093,435	-		PP_0949	0.69	+0.4
1,093,554	+		PP_0949	0.83	-1.5
1,093,621	-				-0.0
1,093,717	+				+0.1
1,093,718	-				+0.2
1,093,718	-				+0.4
1,093,718	-				+0.2