Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0555 and PP_0556 are separated by 22 nucleotides PP_0556 and PP_0557 are separated by 283 nucleotides
PP_0555: PP_0555 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 644,039 to 645,016
_0555
PP_0556: PP_0556 - Acetoin catabolism protein, at 645,039 to 646,094
_0556
PP_0557: PP_0557 - Acetoin catabolism regulatory protein, at 646,378 to 648,231
_0557
Position (kb) 645
646
647 Strain fitness (log2 ratio) -2
-1
0
1 at 644.055 kb on + strand at 644.259 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.292 kb on + strand, within PP_0555 at 644.370 kb on + strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.372 kb on + strand, within PP_0555 at 644.485 kb on - strand, within PP_0555 at 644.754 kb on + strand, within PP_0555 at 644.755 kb on - strand, within PP_0555 at 644.889 kb on + strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.976 kb on + strand at 644.976 kb on + strand at 644.977 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand at 645.349 kb on - strand, within PP_0556 at 645.561 kb on + strand, within PP_0556 at 645.561 kb on + strand, within PP_0556 at 645.562 kb on - strand, within PP_0556 at 646.107 kb on - strand at 646.175 kb on + strand at 646.331 kb on - strand at 646.331 kb on - strand at 646.348 kb on - strand at 646.504 kb on + strand at 646.648 kb on + strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.662 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.739 kb on - strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 647.065 kb on + strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.087 kb on - strand, within PP_0557
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml remove 644,055 + -0.8 644,259 + PP_0555 0.22 -0.3 644,289 + PP_0555 0.26 -0.1 644,289 + PP_0555 0.26 +1.1 644,289 + PP_0555 0.26 -0.5 644,292 + PP_0555 0.26 +0.4 644,370 + PP_0555 0.34 +0.9 644,371 - PP_0555 0.34 +1.3 644,371 - PP_0555 0.34 -0.2 644,372 + PP_0555 0.34 -0.4 644,485 - PP_0555 0.46 -0.8 644,754 + PP_0555 0.73 -0.7 644,755 - PP_0555 0.73 +0.6 644,889 + PP_0555 0.87 -0.5 644,890 - PP_0555 0.87 -1.1 644,890 - PP_0555 0.87 -2.1 644,976 + -0.8 644,976 + -1.3 644,977 - +0.1 644,999 - +0.5 644,999 - -1.2 644,999 - -1.0 645,349 - PP_0556 0.29 -0.4 645,561 + PP_0556 0.49 -0.5 645,561 + PP_0556 0.49 -1.4 645,562 - PP_0556 0.50 -0.3 646,107 - +0.0 646,175 + -0.0 646,331 - +0.9 646,331 - +0.1 646,348 - -1.3 646,504 + +0.7 646,648 + PP_0557 0.15 -0.5 646,649 - PP_0557 0.15 -0.0 646,649 - PP_0557 0.15 +1.0 646,649 - PP_0557 0.15 -0.0 646,662 + PP_0557 0.15 +0.7 646,738 + PP_0557 0.19 +0.4 646,738 + PP_0557 0.19 -0.3 646,739 - PP_0557 0.19 -0.2 646,913 + PP_0557 0.29 +0.3 646,913 + PP_0557 0.29 -0.0 646,913 + PP_0557 0.29 -0.2 646,913 + PP_0557 0.29 -0.3 646,914 - PP_0557 0.29 +0.3 646,914 - PP_0557 0.29 -0.6 646,914 - PP_0557 0.29 +0.0 646,914 - PP_0557 0.29 -0.0 647,065 + PP_0557 0.37 +0.3 647,066 - PP_0557 0.37 -0.4 647,066 - PP_0557 0.37 +0.1 647,086 + PP_0557 0.38 -1.1 647,086 + PP_0557 0.38 +1.2 647,087 - PP_0557 0.38 -0.1
Or see this region's nucleotide sequence