Strain Fitness in Pseudomonas putida KT2440 around PP_0093

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0091 and PP_0092 are separated by 55 nucleotidesPP_0092 and PP_0093 are separated by 85 nucleotidesPP_0093 and PP_0094 are separated by 106 nucleotidesPP_0094 and PP_0095 are separated by 121 nucleotides PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020 _0091 PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489 _0092 PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 PP_0094: PP_0094 - 5'-nucleotidase, at 99,758 to 100,408 _0094 PP_0095: PP_0095 - putative enzyme of unknown function, at 100,530 to 101,078 _0095 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 97.626 kb on + strandat 97.630 kb on + strandat 97.631 kb on - strandat 97.665 kb on + strand, within PP_0091at 97.665 kb on + strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.797 kb on + strand, within PP_0091at 97.807 kb on - strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.988 kb on - strandat 97.988 kb on - strandat 97.988 kb on - strandat 98.049 kb on + strandat 98.049 kb on + strandat 98.058 kb on + strandat 98.058 kb on + strandat 98.059 kb on - strandat 98.142 kb on + strandat 98.261 kb on + strand, within PP_0092at 98.287 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.382 kb on - strand, within PP_0092at 98.479 kb on - strandat 98.479 kb on - strandat 98.513 kb on + strandat 98.514 kb on - strandat 98.514 kb on - strandat 98.574 kb on + strandat 98.671 kb on + strandat 98.672 kb on - strandat 98.672 kb on - strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.726 kb on + strand, within PP_0093at 98.726 kb on + strand, within PP_0093at 98.727 kb on - strand, within PP_0093at 98.752 kb on - strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.852 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.956 kb on + strand, within PP_0093at 98.966 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.120 kb on + strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.406 kb on + strand, within PP_0093at 99.448 kb on + strand, within PP_0093at 99.449 kb on - strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.464 kb on + strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.478 kb on - strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.506 kb on - strand, within PP_0093at 99.571 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.770 kb on - strandat 100.014 kb on + strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.096 kb on - strandat 100.096 kb on - strand, within PP_0094at 100.096 kb on - strand, within PP_0094at 100.096 kb on - strandat 100.237 kb on - strand, within PP_0094at 100.410 kb on + strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.469 kb on + strandat 100.469 kb on + strandat 100.470 kb on - strandat 100.546 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.583 kb on - strandat 100.583 kb on - strandat 100.597 kb on + strand, within PP_0095at 100.598 kb on - strand, within PP_0095

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
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97,626 + +1.2
97,630 + -1.1
97,631 - +1.3
97,665 + PP_0091 0.14 +0.3
97,665 + PP_0091 0.14 +0.2
97,666 - PP_0091 0.14 -1.2
97,666 - PP_0091 0.14 +0.3
97,666 - PP_0091 0.14 +0.0
97,667 + PP_0091 0.14 -0.1
97,667 + PP_0091 0.14 +0.1
97,667 + PP_0091 0.14 +0.3
97,667 + PP_0091 0.14 +0.5
97,667 + PP_0091 0.14 -1.2
97,668 - PP_0091 0.15 -0.0
97,668 - PP_0091 0.15 +0.9
97,668 - PP_0091 0.15 -0.1
97,668 - PP_0091 0.15 -0.0
97,668 - PP_0091 0.15 +0.5
97,668 - PP_0091 0.15 +1.3
97,668 - PP_0091 0.15 +0.6
97,668 - PP_0091 0.15 +0.7
97,797 + PP_0091 0.46 +0.1
97,807 - PP_0091 0.48 +0.0
97,923 + PP_0091 0.76 +0.3
97,923 + PP_0091 0.76 +1.5
97,924 - PP_0091 0.77 -0.0
97,924 - PP_0091 0.77 +0.4
97,987 + +0.7
97,987 + +0.3
97,987 + +0.4
97,987 + -0.8
97,988 - -1.5
97,988 - +0.9
97,988 - -0.8
98,049 + +0.4
98,049 + -0.6
98,058 + -0.1
98,058 + -0.5
98,059 - -1.2
98,142 + -1.4
98,261 + PP_0092 0.45 +0.8
98,287 + PP_0092 0.51 +2.1
98,381 + PP_0092 0.74 -0.9
98,381 + PP_0092 0.74 -1.9
98,381 + PP_0092 0.74 -0.1
98,382 - PP_0092 0.74 -1.9
98,479 - -0.0
98,479 - +1.1
98,513 + +2.3
98,514 - +1.0
98,514 - +1.0
98,574 + +0.5
98,671 + -0.8
98,672 - -0.7
98,672 - -0.3
98,674 + +0.8
98,674 + +0.1
98,674 + +1.4
98,674 + -0.3
98,675 - -0.7
98,675 - -0.5
98,675 - +0.3
98,726 + PP_0093 0.14 -0.4
98,726 + PP_0093 0.14 -0.6
98,727 - PP_0093 0.14 +0.6
98,752 - PP_0093 0.16 +0.3
98,851 + PP_0093 0.26 -1.2
98,851 + PP_0093 0.26 +0.5
98,852 - PP_0093 0.26 -0.5
98,873 - PP_0093 0.28 -0.7
98,873 - PP_0093 0.28 -0.2
98,956 + PP_0093 0.35 +1.0
98,966 - PP_0093 0.36 +0.2
98,969 - PP_0093 0.37 +0.1
98,969 - PP_0093 0.37 -0.2
98,969 - PP_0093 0.37 +0.0
99,028 + PP_0093 0.42 -0.9
99,028 + PP_0093 0.42 -0.6
99,029 - PP_0093 0.42 +1.1
99,029 - PP_0093 0.42 +0.5
99,029 - PP_0093 0.42 -0.5
99,029 - PP_0093 0.42 -0.1
99,049 + PP_0093 0.44 -0.9
99,049 + PP_0093 0.44 -0.2
99,049 + PP_0093 0.44 -0.2
99,050 - PP_0093 0.44 -1.2
99,050 - PP_0093 0.44 -0.1
99,120 + PP_0093 0.51 +0.7
99,121 - PP_0093 0.51 -0.9
99,121 - PP_0093 0.51 -0.6
99,157 + PP_0093 0.54 +0.6
99,157 + PP_0093 0.54 -1.7
99,157 + PP_0093 0.54 -0.2
99,157 + PP_0093 0.54 -0.3
99,157 + PP_0093 0.54 -0.5
99,157 + PP_0093 0.54 -0.2
99,157 + PP_0093 0.54 -1.0
99,157 + PP_0093 0.54 -1.0
99,158 - PP_0093 0.54 -0.4
99,158 - PP_0093 0.54 -1.0
99,158 - PP_0093 0.54 +0.1
99,158 - PP_0093 0.54 -1.0
99,158 - PP_0093 0.54 -0.4
99,158 - PP_0093 0.54 -0.3
99,334 + PP_0093 0.70 -0.2
99,334 + PP_0093 0.70 +0.4
99,334 + PP_0093 0.70 -2.1
99,335 - PP_0093 0.71 +0.1
99,335 - PP_0093 0.71 -0.3
99,335 - PP_0093 0.71 +0.2
99,406 + PP_0093 0.77 +0.5
99,448 + PP_0093 0.81 -0.2
99,449 - PP_0093 0.81 +0.2
99,463 + PP_0093 0.82 -0.8
99,463 + PP_0093 0.82 +0.5
99,463 + PP_0093 0.82 -0.2
99,463 + PP_0093 0.82 -0.4
99,463 + PP_0093 0.82 +0.0
99,463 + PP_0093 0.82 -0.1
99,463 + PP_0093 0.82 -0.9
99,464 + PP_0093 0.83 +0.2
99,464 - PP_0093 0.83 -0.4
99,464 - PP_0093 0.83 -0.2
99,478 - PP_0093 0.84 -0.0
99,505 + PP_0093 0.86 -0.4
99,505 + PP_0093 0.86 -1.1
99,506 - PP_0093 0.86 -0.8
99,571 + +1.2
99,709 + +0.7
99,709 + -0.3
99,709 + +0.1
99,769 + +1.5
99,769 + +0.2
99,769 + -0.6
99,770 - -0.5
100,014 + PP_0094 0.39 -0.8
100,015 - PP_0094 0.39 -0.6
100,015 - PP_0094 0.39 +0.2
100,015 - PP_0094 0.39 -0.7
100,015 - PP_0094 0.39 -0.3
100,015 - PP_0094 0.39 +1.2
100,095 + PP_0094 0.52 -0.2
100,095 + PP_0094 0.52 +0.2
100,095 + PP_0094 0.52 +1.2
100,096 - +0.7
100,096 - PP_0094 0.52 +2.1
100,096 - PP_0094 0.52 +0.2
100,096 - -0.3
100,237 - PP_0094 0.74 -0.4
100,410 + -0.3
100,411 - -0.1
100,411 - +1.8
100,411 - -1.8
100,411 - -0.3
100,411 - +0.8
100,411 - -0.2
100,469 + -0.5
100,469 + -0.4
100,470 - +2.3
100,546 + +0.1
100,582 + +0.3
100,582 + +2.1
100,582 + +0.6
100,583 - +0.1
100,583 - -0.1
100,597 + PP_0095 0.12 +1.6
100,598 - PP_0095 0.12 -0.1

Or see this region's nucleotide sequence