Strain Fitness in Pseudomonas putida KT2440 around PP_5689

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,071,335	+		PP_4467	0.22	-0.2
5,071,335	+		PP_4467	0.22	-1.1
5,071,335	+		PP_4467	0.22	-0.8
5,071,335	+		PP_4467	0.22	-0.6
5,071,335	+		PP_4467	0.22	+0.0
5,071,335	+		PP_4467	0.22	+1.9
5,071,336	-		PP_4467	0.23	-0.1
5,071,336	-		PP_4467	0.23	+0.6
5,071,393	-		PP_4467	0.29	-0.3
5,071,393	-		PP_4467	0.29	-0.0
5,071,393	-		PP_4467	0.29	-0.0
5,071,393	-		PP_4467	0.29	+0.3
5,071,393	-		PP_4467	0.29	+0.5
5,071,414	-		PP_4467	0.31	+0.0
5,071,414	-		PP_4467	0.31	+0.1
5,071,419	+		PP_4467	0.32	-0.2
5,071,500	+		PP_4467	0.41	+0.8
5,071,501	-		PP_4467	0.41	-1.8
5,071,521	-		PP_4467	0.43	-0.3
5,071,521	-		PP_4467	0.43	-0.0
5,071,521	-		PP_4467	0.43	-2.0
5,071,524	+		PP_4467	0.43	-0.5
5,071,524	+		PP_4467	0.43	-0.1
5,071,935	-		PP_4467	0.89	-0.3
5,071,981	-				+0.3
5,072,039	-				-0.8
5,072,189	+				+0.0
5,072,203	+				-0.7
5,072,224	+				-1.1
5,072,225	-				+0.2
5,072,391	+		PP_5689	0.19	+1.4
5,072,422	-		PP_5689	0.25	+2.4
5,072,433	-		PP_5689	0.27	-0.3
5,072,480	-		PP_5689	0.35	+0.5
5,072,530	-		PP_5689	0.44	+1.0
5,072,569	+		PP_5689	0.51	+1.1
5,072,697	+		PP_5689	0.73	+0.3
5,072,698	-		PP_5689	0.73	-0.8
5,072,700	-		PP_5689	0.74	+1.2
5,072,700	-		PP_5689	0.74	+0.8
5,072,818	-				-0.2
5,072,851	-				-0.5
5,072,879	+				-3.1
5,072,940	+				-0.5
5,072,943	-				-0.3
5,073,003	-				-0.1
5,073,038	-				+1.1
5,073,087	-				-0.7
5,073,092	-				-0.9
5,073,186	+				+1.5
5,073,188	+				+0.8
5,073,188	+				+0.3
5,073,192	+				-0.2
5,073,293	-		PP_5690	0.16	+0.3
5,073,328	+		PP_5690	0.25	+0.4
5,073,336	-		PP_5690	0.27	+0.7
5,073,336	-		PP_5690	0.27	+0.8
5,073,464	-		PP_5690	0.60	-1.0
5,073,490	-		PP_5690	0.67	+0.4
5,073,502	+		PP_5690	0.70	-1.5
5,073,502	+		PP_5690	0.70	-0.6
5,073,506	+		PP_5690	0.71	-0.5
5,073,506	+		PP_5690	0.71	+0.2
5,073,506	+		PP_5690	0.71	+0.4
5,073,507	-		PP_5690	0.72	-0.3
5,073,507	-		PP_5690	0.72	+2.5
5,073,507	-		PP_5690	0.72	+0.1
5,073,601	+				-0.3
5,073,602	-				-2.5
5,073,737	+		PP_5691	0.14	-1.0
5,073,767	+		PP_5691	0.21	+1.2
5,073,767	+		PP_5691	0.21	+0.1
5,073,767	+		PP_5691	0.21	+0.0
5,073,767	+		PP_5691	0.21	-0.0
5,073,796	-		PP_5691	0.27	-0.8
5,073,837	+		PP_5691	0.36	-0.7