Strain Fitness in Pseudomonas putida KT2440 around PP_5595

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,696,146	-				-0.4
3,696,146	-				+0.5
3,696,196	-				+0.1
3,696,196	-				+0.5
3,696,222	+				-0.1
3,696,315	+				-0.1
3,696,315	+				+0.8
3,696,316	-				+0.4
3,696,322	+				-0.6
3,696,322	+				-1.3
3,696,322	+				+0.5
3,696,323	-				-0.3
3,696,834	+		PP_3262	0.35	+0.7
3,696,835	-		PP_3262	0.35	+1.3
3,696,988	+				-0.1
3,697,030	+				+0.3
3,697,031	-				-1.1
3,697,143	-		PP_5595	0.17	-0.1
3,697,143	-		PP_5595	0.17	-0.4
3,697,143	-		PP_5595	0.17	+2.3
3,697,145	+		PP_5595	0.18	+0.1
3,697,145	+				+0.6
3,697,145	+		PP_5595	0.18	-1.8
3,697,146	-		PP_5595	0.18	-0.8
3,697,146	-				+4.5
3,697,146	-		PP_5595	0.18	+1.1
3,697,146	-		PP_5595	0.18	+1.5
3,697,146	-		PP_5595	0.18	-0.2
3,697,146	-		PP_5595	0.18	+0.5
3,697,355	+		PP_5595	0.68	-0.7
3,697,355	+		PP_5595	0.68	-0.4
3,697,362	-		PP_5595	0.70	+3.2
3,697,362	-		PP_5595	0.70	+0.8
3,697,362	-		PP_5595	0.70	-1.1
3,697,362	-		PP_5595	0.70	+1.6
3,697,579	-				-0.0
3,697,579	-				-0.2
3,697,611	+				-0.7
3,697,611	+				+0.5
3,697,614	+		PP_3263	0.10	-1.7
3,697,614	+		PP_3263	0.10	+0.5
3,697,615	-		PP_3263	0.10	-0.0
3,697,615	-		PP_3263	0.10	+3.4
3,697,777	-		PP_3263	0.27	+2.5
3,697,777	-		PP_3263	0.27	-0.3
3,697,941	+		PP_3263	0.44	-0.4
3,697,991	-		PP_3263	0.50	+1.8
3,698,039	+		PP_3263	0.55	+0.8
3,698,039	+		PP_3263	0.55	-1.0
3,698,039	+				-1.1
3,698,059	+		PP_3263	0.57	+0.8
3,698,059	+		PP_3263	0.57	+0.5
3,698,059	+		PP_3263	0.57	-0.5
3,698,060	-		PP_3263	0.57	+0.5
3,698,060	-		PP_3263	0.57	+0.3
3,698,060	-		PP_3263	0.57	+0.6
3,698,060	-		PP_3263	0.57	-0.5
3,698,061	+		PP_3263	0.57	-0.3
3,698,062	-		PP_3263	0.57	-1.0
3,698,062	-		PP_3263	0.57	-0.3
3,698,196	+		PP_3263	0.71	-0.9
3,698,219	+		PP_3263	0.74	-0.6
3,698,234	+		PP_3263	0.75	+0.4
3,698,240	-		PP_3263	0.76	-0.2
3,698,240	-		PP_3263	0.76	+0.6
3,698,271	+		PP_3263	0.79	+0.5
3,698,271	+		PP_3263	0.79	+0.6
3,698,289	+		PP_3263	0.81	+0.7
3,698,289	+		PP_3263	0.81	+0.5
3,698,290	-		PP_3263	0.81	-0.1
3,698,290	-		PP_3263	0.81	+0.4
3,698,337	+		PP_3263	0.86	+0.8
3,698,338	-		PP_3263	0.86	+0.8
3,698,392	-				+0.9