Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0651 and PP_5453 are separated by 833 nucleotides PP_5453 and PP_0652 are separated by 64 nucleotides
PP_0651: PP_0651 - Acetyltransferase, GNAT family, at 758,579 to 759,028
_0651
PP_5453: PP_5453 - conserved protein of unknown function, at 759,862 to 760,089
_5453
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 758.881 kb on + strand, within PP_0651 at 758.881 kb on + strand, within PP_0651 at 758.881 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.884 kb on - strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.948 kb on + strand, within PP_0651 at 758.948 kb on + strand, within PP_0651 at 759.011 kb on - strand at 759.026 kb on + strand at 759.026 kb on + strand at 759.027 kb on - strand at 759.042 kb on + strand at 759.042 kb on + strand at 759.047 kb on + strand at 759.048 kb on - strand at 759.048 kb on - strand at 759.070 kb on - strand at 759.070 kb on - strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.096 kb on + strand at 759.096 kb on + strand at 759.096 kb on + strand at 759.097 kb on - strand at 759.097 kb on - strand at 759.118 kb on + strand at 759.118 kb on + strand at 759.119 kb on - strand at 759.119 kb on - strand at 759.202 kb on + strand at 759.226 kb on + strand at 759.276 kb on + strand at 759.277 kb on - strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.289 kb on - strand at 759.294 kb on + strand at 759.294 kb on + strand at 759.295 kb on - strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.311 kb on - strand at 759.313 kb on + strand at 759.313 kb on + strand at 759.374 kb on + strand at 759.375 kb on - strand at 759.375 kb on - strand at 759.396 kb on + strand at 759.419 kb on + strand at 759.434 kb on - strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.760 kb on - strand at 759.810 kb on + strand at 759.811 kb on - strand at 759.811 kb on - strand at 760.055 kb on + strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.087 kb on + strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.306 kb on - strand, within PP_0652 at 760.407 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.520 kb on + strand, within PP_0652 at 760.521 kb on - strand, within PP_0652 at 760.920 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml remove 758,881 + PP_0651 0.67 -1.0 758,881 + PP_0651 0.67 -0.0 758,881 + PP_0651 0.67 -1.2 758,883 + PP_0651 0.68 +0.5 758,883 + PP_0651 0.68 -0.9 758,883 + PP_0651 0.68 -0.6 758,884 - PP_0651 0.68 +0.4 758,913 + PP_0651 0.74 +0.2 758,913 + PP_0651 0.74 -1.0 758,913 + PP_0651 0.74 +0.1 758,913 + PP_0651 0.74 +0.1 758,913 + PP_0651 0.74 +1.0 758,914 - PP_0651 0.74 +0.9 758,914 - PP_0651 0.74 +0.2 758,914 - PP_0651 0.74 +1.4 758,914 - PP_0651 0.74 +0.0 758,914 - PP_0651 0.74 +0.3 758,948 + PP_0651 0.82 +0.9 758,948 + PP_0651 0.82 -0.0 759,011 - -0.9 759,026 + -0.4 759,026 + -1.0 759,027 - -0.5 759,042 + -1.1 759,042 + -0.9 759,047 + +0.7 759,048 - -0.0 759,048 - +0.5 759,070 - +0.2 759,070 - +0.1 759,092 + +0.8 759,092 + -0.3 759,092 + +0.5 759,092 + +0.0 759,093 - -1.2 759,093 - +0.1 759,093 - +1.0 759,093 - +0.1 759,096 + +0.6 759,096 + -1.5 759,096 + -1.1 759,097 - -1.9 759,097 - +0.3 759,118 + -0.1 759,118 + -0.2 759,119 - -0.1 759,119 - -0.9 759,202 + -0.2 759,226 + +0.0 759,276 + +0.6 759,277 - +0.1 759,288 + +0.1 759,288 + -0.6 759,288 + +0.4 759,289 - +1.0 759,294 + +1.2 759,294 + +0.1 759,295 - +0.5 759,310 + -1.0 759,310 + -0.2 759,310 + +0.1 759,310 + +0.2 759,311 - +0.8 759,313 + +0.1 759,313 + +0.0 759,374 + +0.3 759,375 - +0.3 759,375 - -1.0 759,396 + -0.6 759,419 + +0.4 759,434 - +0.6 759,607 + +1.1 759,608 - -0.0 759,608 - -0.8 759,675 + +0.1 759,675 + -0.6 759,675 + -0.3 759,675 + +0.2 759,676 - +1.4 759,676 - -0.1 759,676 - +0.5 759,676 - +1.2 759,676 - +0.0 759,676 - -1.0 759,760 - +0.8 759,810 + -0.0 759,811 - +0.4 759,811 - +1.1 760,055 + PP_5453 0.85 +0.9 760,056 - PP_5453 0.85 +1.8 760,056 - PP_5453 0.85 +3.6 760,087 + -0.4 760,088 - -0.3 760,088 - +0.9 760,088 - +0.2 760,160 + -1.1 760,160 + +0.3 760,160 + +0.2 760,160 + -0.5 760,160 + -0.0 760,160 + -0.4 760,161 - -0.1 760,161 - -0.9 760,161 - -0.0 760,161 - +0.2 760,161 - -0.1 760,305 + PP_0652 0.11 -0.9 760,305 + PP_0652 0.11 +0.7 760,305 + PP_0652 0.11 -0.0 760,305 + PP_0652 0.11 -0.3 760,305 + PP_0652 0.11 +0.2 760,306 - PP_0652 0.11 -0.4 760,407 - PP_0652 0.18 +0.6 760,433 - PP_0652 0.20 +1.0 760,433 - PP_0652 0.20 -0.8 760,520 + PP_0652 0.26 +0.4 760,521 - PP_0652 0.26 -0.5 760,920 + PP_0652 0.55 +0.9 760,968 + PP_0652 0.59 -0.1 760,968 + PP_0652 0.59 -0.1 760,968 + PP_0652 0.59 +0.3 760,969 - PP_0652 0.59 +0.7 761,037 - PP_0652 0.64 +0.1 761,081 + PP_0652 0.67 -0.4 761,081 + PP_0652 0.67 -0.0 761,081 + PP_0652 0.67 -0.0 761,081 + PP_0652 0.67 -1.4 761,081 + PP_0652 0.67 -0.1 761,081 + PP_0652 0.67 +0.1 761,081 + PP_0652 0.67 -0.9 761,082 - PP_0652 0.67 -1.5 761,082 - PP_0652 0.67 -0.9 761,082 - PP_0652 0.67 -0.8 761,085 + PP_0652 0.67 -0.7 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 -0.3 761,085 + PP_0652 0.67 -0.5 761,085 + PP_0652 0.67 +0.0 761,085 + PP_0652 0.67 +0.9 761,085 + PP_0652 0.67 +0.3 761,085 + PP_0652 0.67 +0.3 761,085 + PP_0652 0.67 -0.2 761,085 + PP_0652 0.67 +0.8 761,085 + PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 +1.1 761,086 - PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 -0.5 761,086 - PP_0652 0.67 +0.8 761,086 - PP_0652 0.67 +0.4 761,086 - PP_0652 0.67 +0.1 761,086 - PP_0652 0.67 +1.5 761,086 - PP_0652 0.67 +0.0 761,086 - PP_0652 0.67 -0.6 761,086 - PP_0652 0.67 -0.4 761,086 - PP_0652 0.67 +0.0
Or see this region's nucleotide sequence