Strain Fitness in Pseudomonas putida KT2440 around PP_5338

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
6,083,891	+				-0.2
6,084,047	+		PP_5337	0.27	+0.1
6,084,058	-		PP_5337	0.28	-0.5
6,084,058	-		PP_5337	0.28	-1.9
6,084,059	+		PP_5337	0.28	+0.9
6,084,060	-		PP_5337	0.28	-0.5
6,084,123	-		PP_5337	0.35	+0.3
6,084,123	-		PP_5337	0.35	+0.1
6,084,123	-		PP_5337	0.35	+0.8
6,084,123	-		PP_5337	0.35	-0.1
6,084,123	-		PP_5337	0.35	-0.1
6,084,128	-		PP_5337	0.35	+0.1
6,084,272	+		PP_5337	0.51	-0.5
6,084,273	-		PP_5337	0.51	+0.4
6,084,316	+		PP_5337	0.56	-0.2
6,084,316	+		PP_5337	0.56	-0.2
6,084,316	+		PP_5337	0.56	+1.1
6,084,316	+		PP_5337	0.56	-0.2
6,084,316	+		PP_5337	0.56	+0.3
6,084,317	-		PP_5337	0.56	+0.8
6,084,317	-		PP_5337	0.56	-0.4
6,084,317	-		PP_5337	0.56	+1.3
6,084,334	-		PP_5337	0.58	+0.8
6,084,789	+				+0.1
6,084,805	-				-1.2
6,084,895	+				+0.3
6,084,896	-				+1.2
6,084,896	-				+0.4
6,084,897	+				+1.5
6,084,898	-				+0.1
6,084,898	-				+0.2
6,084,898	-				-3.2
6,084,898	-				+0.3
6,084,972	+				-1.3
6,084,972	+				+0.8
6,084,972	+				+0.1
6,084,972	+				+0.0
6,084,975	+				-1.2
6,084,975	+				-0.3
6,084,975	+				-0.4
6,085,214	+		PP_5338	0.22	-1.0
6,085,220	+		PP_5338	0.23	+1.5
6,085,220	+		PP_5338	0.23	-0.6
6,085,220	+		PP_5338	0.23	+0.8
6,085,221	-		PP_5338	0.23	+0.7
6,085,307	+		PP_5338	0.29	+0.8
6,085,308	-		PP_5338	0.29	-2.5
6,085,409	+		PP_5338	0.36	+0.7
6,085,456	+		PP_5338	0.39	+1.3
6,086,016	+		PP_5338	0.78	+0.6
6,086,017	-		PP_5338	0.78	-2.0
6,086,161	-		PP_5338	0.88	+1.0
6,086,186	+				-1.9
6,086,186	+				-1.8
6,086,365	+				+0.9
6,086,366	-				+0.7
6,086,366	-				+0.4
6,086,366	-				+1.1
6,086,478	+				+0.7
6,086,478	+				+0.9
6,086,478	+				+1.2
6,086,478	+				+1.1
6,086,479	-				-0.5
6,086,479	-				-0.2
6,086,479	-				-0.5
6,086,513	+				+0.6
6,086,514	-				-0.7
6,086,514	-				-0.7
6,086,550	-				+0.3
6,086,791	+		PP_5339	0.29	-0.5
6,086,938	+		PP_5339	0.43	-0.5
6,087,082	+		PP_5339	0.56	-0.7
6,087,159	+		PP_5339	0.63	+0.9
6,087,186	+		PP_5339	0.66	-0.6