Strain Fitness in Pseudomonas putida KT2440 around PP_5276

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
6,024,157	-		PP_5275	0.39	+0.6
6,024,403	+		PP_5275	0.55	-0.1
6,024,403	+				-0.1
6,024,404	-		PP_5275	0.55	-0.6
6,024,404	-		PP_5275	0.55	-0.3
6,024,454	+		PP_5275	0.59	+0.7
6,024,455	-		PP_5275	0.59	-0.8
6,024,484	+				+2.5
6,024,485	-		PP_5275	0.61	+0.5
6,024,499	+		PP_5275	0.62	+0.3
6,024,500	-		PP_5275	0.62	-1.6
6,024,500	-		PP_5275	0.62	-0.4
6,024,500	-		PP_5275	0.62	+0.4
6,024,501	+		PP_5275	0.62	+1.0
6,024,501	+		PP_5275	0.62	-0.7
6,024,501	+		PP_5275	0.62	-0.4
6,024,501	+		PP_5275	0.62	-0.2
6,024,501	+		PP_5275	0.62	-0.6
6,024,501	+		PP_5275	0.62	+0.8
6,024,502	-		PP_5275	0.62	-0.9
6,024,502	-		PP_5275	0.62	-0.1
6,024,502	-		PP_5275	0.62	+0.2
6,024,502	-		PP_5275	0.62	+0.5
6,024,502	-		PP_5275	0.62	+0.2
6,024,505	+		PP_5275	0.62	+0.6
6,024,506	-		PP_5275	0.62	-0.5
6,024,506	-		PP_5275	0.62	-0.5
6,024,649	+		PP_5275	0.72	-0.1
6,024,649	+		PP_5275	0.72	+1.2
6,024,649	+		PP_5275	0.72	-0.7
6,024,649	+		PP_5275	0.72	-0.3
6,024,649	+		PP_5275	0.72	+0.1
6,024,650	-		PP_5275	0.72	+1.1
6,024,718	+		PP_5275	0.76	-0.5
6,024,719	-		PP_5275	0.77	+0.9
6,024,719	-		PP_5275	0.77	-0.5
6,024,731	+		PP_5275	0.77	-0.3
6,024,731	+		PP_5275	0.77	-0.6
6,024,732	-		PP_5275	0.77	-0.3
6,024,732	-		PP_5275	0.77	-0.3
6,024,793	+		PP_5275	0.81	-1.5
6,024,855	-		PP_5275	0.86	-1.7
6,024,855	-		PP_5275	0.86	-0.5
6,024,893	+		PP_5275	0.88	-0.6
6,024,893	+		PP_5275	0.88	-0.7
6,025,041	-				+1.5
6,025,067	-				+0.2
6,025,280	-				+0.7
6,025,349	+		PP_5276	0.14	+0.3
6,025,381	+		PP_5276	0.16	-2.2
6,025,382	-		PP_5276	0.16	-0.4
6,025,382	-		PP_5276	0.16	-0.4
6,025,382	-		PP_5276	0.16	+1.4
6,025,384	+		PP_5276	0.16	+1.7
6,025,384	+		PP_5276	0.16	+0.3
6,025,384	+		PP_5276	0.16	+0.2
6,025,384	+		PP_5276	0.16	-0.1
6,025,385	-		PP_5276	0.16	+1.6
6,025,385	-		PP_5276	0.16	+0.4
6,025,385	-		PP_5276	0.16	-1.1
6,025,385	-		PP_5276	0.16	-0.2
6,025,385	-		PP_5276	0.16	+1.2
6,025,385	-		PP_5276	0.16	+1.4
6,025,407	+		PP_5276	0.18	+1.2
6,025,408	-		PP_5276	0.18	-0.3
6,025,576	-		PP_5276	0.29	-0.2
6,025,584	+		PP_5276	0.29	+1.1
6,025,584	+		PP_5276	0.29	+0.9
6,025,796	-		PP_5276	0.43	+1.8
6,025,928	-		PP_5276	0.51	-0.3
6,025,945	+		PP_5276	0.53	+0.9
6,026,010	-		PP_5276	0.57	-0.1
6,026,061	-		PP_5276	0.60	+0.7
6,026,061	-		PP_5276	0.60	+2.6
6,026,128	+		PP_5276	0.64	-0.0
6,026,128	+		PP_5276	0.64	+0.0
6,026,128	+		PP_5276	0.64	+0.1
6,026,129	-		PP_5276	0.64	+2.7
6,026,158	+		PP_5276	0.66	+1.4
6,026,158	+		PP_5276	0.66	+0.8
6,026,158	+		PP_5276	0.66	+0.3
6,026,248	+		PP_5276	0.72	+1.3
6,026,248	+		PP_5276	0.72	-0.2
6,026,258	-		PP_5276	0.73	+0.6
6,026,294	-		PP_5276	0.75	-0.8
6,026,491	+		PP_5276	0.88	+0.9
6,026,491	+		PP_5276	0.88	+0.5
6,026,491	+				-0.8
6,026,492	-		PP_5276	0.88	+1.0
6,026,492	-		PP_5276	0.88	+1.9
6,026,537	-				+1.1
6,026,552	+				-0.2
6,026,552	+				+0.2
6,026,553	-				-0.6
6,026,556	+				+0.6
6,026,556	+				+1.4
6,026,556	+				-1.2
6,026,557	-				+0.4
6,026,557	-				+1.4
6,026,557	-				-1.0
6,026,557	-				+0.4
6,026,557	-				+2.0
6,026,557	-				-0.7
6,026,557	-				+1.4
6,026,678	+				-2.8
6,026,678	+				+0.4
6,026,678	+				+1.1
6,026,678	+				-0.3
6,026,678	+				-0.0
6,026,678	+				+0.7
6,026,678	+				-0.1
6,026,679	-				+0.7
6,026,679	-				+1.2
6,026,679	-				+0.2
6,026,679	-				-0.2
6,026,680	+				+1.0
6,026,680	+				+0.2
6,026,680	+				-1.0
6,026,680	+				+0.2
6,026,681	-				-0.1
6,026,759	+				-0.5
6,026,759	+				-0.8
6,026,759	+				-0.5
6,026,760	-				+1.5
6,026,760	-				+0.3
6,026,760	-				+0.5
6,027,070	+		PP_5277	0.31	-0.1
6,027,071	-				+3.2
6,027,082	+		PP_5277	0.32	+1.8
6,027,082	+		PP_5277	0.32	-1.1
6,027,082	+		PP_5277	0.32	-1.0
6,027,082	+		PP_5277	0.32	-0.8
6,027,083	-		PP_5277	0.32	-0.5
6,027,083	-		PP_5277	0.32	+0.2
6,027,083	-		PP_5277	0.32	+0.2
6,027,083	-		PP_5277	0.32	-1.4
6,027,083	-		PP_5277	0.32	-0.4
6,027,083	-		PP_5277	0.32	-0.4
6,027,140	-		PP_5277	0.37	+0.3
6,027,189	+		PP_5277	0.41	+1.2
6,027,190	-		PP_5277	0.41	+0.6
6,027,448	-		PP_5277	0.64	+0.5
6,027,448	-		PP_5277	0.64	-0.0
6,027,459	+		PP_5277	0.65	+1.7
6,027,583	-		PP_5277	0.76	+0.7
6,027,586	+		PP_5277	0.76	+0.0
6,027,586	+		PP_5277	0.76	-1.0
6,027,586	+		PP_5277	0.76	-1.0
6,027,587	-		PP_5277	0.76	+0.4
6,027,587	-		PP_5277	0.76	-0.7
6,027,587	-		PP_5277	0.76	+1.0
6,027,653	+		PP_5277	0.82	-1.0