Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5157 and PP_5158 are separated by 119 nucleotides PP_5158 and PP_5159 overlap by 14 nucleotides PP_5159 and PP_5160 are separated by 122 nucleotides PP_5160 and PP_5161 are separated by 0 nucleotides
PP_5157: PP_5157 - conserved exported protein of unknown function, at 5,883,417 to 5,883,905
_5157
PP_5158: PP_5158 - conserved protein of unknown function, at 5,884,025 to 5,884,528
_5158
PP_5159: PP_5159 - conserved protein of unknown function, at 5,884,515 to 5,885,138
_5159
PP_5160: PP_5160 - conserved exported protein of unknown function, at 5,885,261 to 5,886,013
_5160
PP_5161: PP_5161 - putative lysophospholipase, at 5,886,014 to 5,887,015
_5161
Position (kb)
5884
5885
5886 Strain fitness (log2 ratio)
-1
0
1
2 at 5883.521 kb on - strand, within PP_5157 at 5883.540 kb on + strand, within PP_5157 at 5883.678 kb on + strand, within PP_5157 at 5883.678 kb on + strand, within PP_5157 at 5883.679 kb on - strand, within PP_5157 at 5883.736 kb on + strand, within PP_5157 at 5883.736 kb on + strand, within PP_5157 at 5883.737 kb on - strand, within PP_5157 at 5883.737 kb on - strand, within PP_5157 at 5883.737 kb on - strand, within PP_5157 at 5883.737 kb on - strand, within PP_5157 at 5883.737 kb on - strand, within PP_5157 at 5883.903 kb on + strand at 5883.904 kb on - strand at 5883.955 kb on - strand at 5883.965 kb on - strand at 5884.034 kb on + strand at 5884.034 kb on + strand at 5884.034 kb on + strand at 5884.034 kb on + strand at 5884.034 kb on + strand at 5884.035 kb on - strand at 5884.035 kb on - strand at 5884.035 kb on - strand at 5884.035 kb on - strand at 5884.035 kb on - strand at 5884.036 kb on + strand at 5884.036 kb on + strand at 5884.036 kb on + strand at 5884.037 kb on - strand at 5884.037 kb on - strand at 5884.037 kb on - strand at 5884.037 kb on - strand at 5884.040 kb on - strand at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.161 kb on + strand, within PP_5158 at 5884.162 kb on - strand, within PP_5158 at 5884.162 kb on - strand, within PP_5158 at 5884.162 kb on - strand, within PP_5158 at 5884.162 kb on - strand, within PP_5158 at 5884.208 kb on + strand, within PP_5158 at 5884.382 kb on + strand, within PP_5158 at 5884.382 kb on + strand, within PP_5158 at 5884.383 kb on - strand, within PP_5158 at 5884.383 kb on - strand, within PP_5158 at 5884.465 kb on - strand, within PP_5158 at 5884.585 kb on - strand, within PP_5159 at 5884.614 kb on + strand, within PP_5159 at 5884.614 kb on + strand, within PP_5159 at 5884.615 kb on - strand, within PP_5159 at 5884.717 kb on + strand, within PP_5159 at 5884.717 kb on + strand, within PP_5159 at 5884.778 kb on - strand, within PP_5159 at 5884.795 kb on + strand, within PP_5159 at 5884.796 kb on - strand, within PP_5159 at 5884.962 kb on - strand, within PP_5159 at 5885.131 kb on - strand at 5885.131 kb on - strand at 5885.131 kb on - strand at 5885.150 kb on + strand at 5885.150 kb on + strand at 5885.150 kb on + strand at 5885.150 kb on + strand at 5885.150 kb on + strand at 5885.151 kb on - strand at 5885.203 kb on - strand at 5885.203 kb on - strand at 5885.235 kb on + strand at 5885.235 kb on + strand at 5885.235 kb on + strand at 5885.336 kb on + strand at 5885.336 kb on + strand at 5885.336 kb on + strand at 5885.336 kb on + strand at 5885.336 kb on + strand at 5885.336 kb on + strand at 5885.337 kb on - strand, within PP_5160 at 5885.337 kb on - strand, within PP_5160 at 5885.337 kb on - strand, within PP_5160 at 5885.337 kb on - strand, within PP_5160 at 5885.337 kb on - strand, within PP_5160 at 5885.338 kb on + strand, within PP_5160 at 5885.338 kb on + strand, within PP_5160 at 5885.339 kb on - strand, within PP_5160 at 5885.339 kb on - strand, within PP_5160 at 5885.405 kb on + strand, within PP_5160 at 5885.433 kb on - strand at 5885.867 kb on + strand, within PP_5160 at 5885.867 kb on + strand, within PP_5160 at 5885.867 kb on + strand, within PP_5160 at 5885.867 kb on + strand, within PP_5160 at 5885.867 kb on + strand, within PP_5160 at 5885.868 kb on - strand, within PP_5160 at 5885.868 kb on - strand, within PP_5160 at 5885.873 kb on + strand, within PP_5160 at 5885.942 kb on + strand at 5885.942 kb on + strand at 5885.942 kb on + strand at 5885.943 kb on - strand at 5885.967 kb on + strand at 5885.967 kb on + strand at 5885.967 kb on + strand at 5886.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml remove 5,883,521 - PP_5157 0.21 +0.1 5,883,540 + PP_5157 0.25 -0.6 5,883,678 + PP_5157 0.53 -1.4 5,883,678 + PP_5157 0.53 +0.5 5,883,679 - PP_5157 0.54 +0.4 5,883,736 + PP_5157 0.65 +0.0 5,883,736 + PP_5157 0.65 -0.1 5,883,737 - PP_5157 0.65 +0.4 5,883,737 - PP_5157 0.65 -1.2 5,883,737 - PP_5157 0.65 +0.2 5,883,737 - PP_5157 0.65 -0.1 5,883,737 - PP_5157 0.65 +0.0 5,883,903 + +0.5 5,883,904 - +0.4 5,883,955 - +0.1 5,883,965 - +0.3 5,884,034 + -0.0 5,884,034 + +0.2 5,884,034 + -0.1 5,884,034 + +0.4 5,884,034 + -1.6 5,884,035 - -0.0 5,884,035 - +0.6 5,884,035 - -0.1 5,884,035 - +0.1 5,884,035 - +0.5 5,884,036 + -1.0 5,884,036 + +0.3 5,884,036 + +0.4 5,884,037 - -0.1 5,884,037 - -0.8 5,884,037 - -0.6 5,884,037 - +0.5 5,884,040 - +0.1 5,884,161 + PP_5158 0.27 -0.2 5,884,161 + PP_5158 0.27 +0.1 5,884,161 + PP_5158 0.27 +1.4 5,884,161 + PP_5158 0.27 -1.7 5,884,161 + PP_5158 0.27 -0.2 5,884,161 + PP_5158 0.27 -0.1 5,884,161 + PP_5158 0.27 +0.1 5,884,162 - PP_5158 0.27 +0.3 5,884,162 - PP_5158 0.27 +2.5 5,884,162 - PP_5158 0.27 +0.8 5,884,162 - PP_5158 0.27 -0.2 5,884,208 + PP_5158 0.36 +0.2 5,884,382 + PP_5158 0.71 -0.1 5,884,382 + PP_5158 0.71 -0.2 5,884,383 - PP_5158 0.71 +0.4 5,884,383 - PP_5158 0.71 -0.7 5,884,465 - PP_5158 0.87 +0.3 5,884,585 - PP_5159 0.11 +0.5 5,884,614 + PP_5159 0.16 -1.0 5,884,614 + PP_5159 0.16 +0.3 5,884,615 - PP_5159 0.16 +0.6 5,884,717 + PP_5159 0.32 +1.7 5,884,717 + PP_5159 0.32 +0.0 5,884,778 - PP_5159 0.42 +0.5 5,884,795 + PP_5159 0.45 +0.7 5,884,796 - PP_5159 0.45 -0.3 5,884,962 - PP_5159 0.72 +1.0 5,885,131 - +0.6 5,885,131 - -0.5 5,885,131 - -0.2 5,885,150 + +0.9 5,885,150 + -0.3 5,885,150 + +0.0 5,885,150 + -1.1 5,885,150 + -0.4 5,885,151 - -0.5 5,885,203 - +0.1 5,885,203 - +2.6 5,885,235 + -0.1 5,885,235 + -0.4 5,885,235 + -0.2 5,885,336 + -0.3 5,885,336 + +0.8 5,885,336 + -0.5 5,885,336 + -0.5 5,885,336 + +0.3 5,885,336 + -0.6 5,885,337 - PP_5160 0.10 -0.2 5,885,337 - PP_5160 0.10 +0.8 5,885,337 - PP_5160 0.10 +0.9 5,885,337 - PP_5160 0.10 +0.2 5,885,337 - PP_5160 0.10 -1.5 5,885,338 + PP_5160 0.10 +0.5 5,885,338 + PP_5160 0.10 -0.1 5,885,339 - PP_5160 0.10 +0.3 5,885,339 - PP_5160 0.10 +0.2 5,885,405 + PP_5160 0.19 -0.3 5,885,433 - +1.5 5,885,867 + PP_5160 0.80 +0.7 5,885,867 + PP_5160 0.80 -0.2 5,885,867 + PP_5160 0.80 -0.5 5,885,867 + PP_5160 0.80 +1.7 5,885,867 + PP_5160 0.80 +0.2 5,885,868 - PP_5160 0.81 +0.3 5,885,868 - PP_5160 0.81 +1.0 5,885,873 + PP_5160 0.81 +0.0 5,885,942 + +0.4 5,885,942 + -0.4 5,885,942 + -0.1 5,885,943 - -0.3 5,885,967 + -0.0 5,885,967 + +0.2 5,885,967 + -0.2 5,886,046 - +0.3
Or see this region's nucleotide sequence