Strain Fitness in Pseudomonas putida KT2440 around PP_4989

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,686,088	-		PP_4988	0.84	-0.4
5,686,878	+				+0.3
5,686,879	-				+0.1
5,686,900	-				-0.3
5,687,112	+		PP_4989	0.10	-0.5
5,687,114	+				-0.4
5,687,256	-		PP_4989	0.17	-0.2
5,687,594	-		PP_4989	0.33	+0.5
5,687,791	+		PP_4989	0.43	+1.2
5,687,792	-		PP_4989	0.43	+0.6
5,688,013	+		PP_4989	0.54	+0.4
5,688,014	-		PP_4989	0.54	+0.4
5,688,014	-		PP_4989	0.54	+1.1
5,688,670	+		PP_4989	0.86	+3.2
5,688,671	-		PP_4989	0.86	-0.7
5,688,805	+				-0.5
5,688,805	+				+1.3
5,688,806	-				-1.3
5,688,806	-				-0.4
5,688,831	-				+1.2
5,688,839	-				-1.3
5,688,978	+				-2.1
5,688,979	-				-0.4
5,688,979	-				-0.4
5,688,979	-				-1.3
5,688,981	-				-1.2
5,689,328	-		PP_4990	0.63	-1.3
5,689,668	+		PP_4991	0.38	+0.1
5,689,851	-		PP_4991	0.88	+3.1
5,689,916	-				+0.5
5,689,916	-				-0.7
5,689,916	-				-0.6