Strain Fitness in Pseudomonas putida KT2440 around PP_4551

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,174,444	+		PP_4550	0.68	+0.1
5,174,598	-		PP_4550	0.77	+0.5
5,174,825	+				-2.6
5,174,825	+				+1.3
5,174,826	-				-1.4
5,174,912	+				+0.0
5,174,913	-				-0.1
5,174,920	+				-0.9
5,174,981	+				+0.5
5,174,982	-				-1.9
5,174,982	-				-0.8
5,174,984	+				+0.1
5,174,984	+				+0.2
5,174,984	+				-0.7
5,174,984	+				+0.8
5,174,985	-				-0.2
5,175,019	+				-0.6
5,175,019	+				-0.0
5,175,020	-				-1.6
5,175,020	-				-0.8
5,175,020	-				+0.5
5,175,027	+				+0.8
5,175,028	-				+0.2
5,175,028	-				+0.2
5,175,068	-				+1.4
5,175,074	+				+1.2
5,175,090	+				+1.2
5,175,090	+				+1.5
5,175,090	+				+0.1
5,175,090	+				-0.1
5,175,090	+				+0.1
5,175,091	-				+0.5
5,175,091	-				-0.6
5,175,091	-				+0.2
5,175,091	-				+1.9
5,175,092	+				+1.3
5,175,092	+				+0.5
5,175,092	+				-0.3
5,175,092	+				-1.4
5,175,093	-				-0.7
5,175,093	-				-0.3
5,175,093	-				+1.7
5,175,093	-				-0.6
5,175,125	+				-2.2
5,175,126	-				-0.3
5,175,126	-				-0.5
5,175,126	-				-0.1
5,175,161	+				-0.8
5,175,161	+				+1.1
5,175,161	+				+0.3
5,175,162	-				-1.4
5,175,162	-				+1.7
5,175,162	-				-1.1
5,175,162	-				-0.2
5,175,246	+				-1.8
5,175,250	+				-0.9
5,175,250	+				-0.2
5,175,250	+				-1.0
5,175,250	+				-0.1
5,175,250	+				-0.6
5,175,250	+				-0.1
5,175,251	-				+0.2
5,175,251	-				-0.1
5,175,251	-				-0.1
5,175,251	-				+0.1
5,175,251	-				-0.5
5,175,277	+				-0.4
5,175,277	+				-0.2
5,175,277	+				+2.8
5,175,547	-		PP_4551	0.37	-0.5
5,175,547	-		PP_4551	0.37	+1.5
5,175,547	-		PP_4551	0.37	+0.1
5,175,561	+		PP_4551	0.38	+0.7
5,175,561	+		PP_4551	0.38	+0.8
5,175,616	-		PP_4551	0.44	-0.2
5,175,616	-		PP_4551	0.44	+1.5
5,175,616	-		PP_4551	0.44	+0.3
5,175,798	+		PP_4551	0.63	+0.2
5,176,012	+		PP_4551	0.86	-0.3
5,176,012	+		PP_4551	0.86	+2.6
5,176,012	+		PP_4551	0.86	+0.5
5,176,012	+		PP_4551	0.86	-0.4
5,176,012	+		PP_4551	0.86	+0.7
5,176,013	-		PP_4551	0.86	+1.2
5,176,013	-		PP_4551	0.86	+0.5
5,176,013	-		PP_4551	0.86	-1.1
5,176,013	-		PP_4551	0.86	+1.0
5,176,013	-		PP_4551	0.86	+1.9
5,176,013	-		PP_4551	0.86	-0.4
5,176,013	-		PP_4551	0.86	+2.0
5,176,013	-		PP_4551	0.86	+0.6
5,176,013	-		PP_4551	0.86	+1.2
5,176,026	+		PP_4551	0.88	-3.7
5,176,048	+				-0.0
5,176,712	+				+0.1
5,176,794	-				-1.1
5,176,913	-		PP_4553	0.12	-0.3
5,176,913	-		PP_4553	0.12	-0.9
5,176,913	-		PP_4553	0.12	-0.1
5,177,047	+		PP_4553	0.23	-0.3
5,177,048	-		PP_4553	0.23	+1.0
5,177,048	-		PP_4553	0.23	+0.1
5,177,048	-		PP_4553	0.23	-0.4
5,177,129	+		PP_4553	0.30	+0.0
5,177,130	-		PP_4553	0.30	-1.1
5,177,131	+		PP_4553	0.30	-0.2
5,177,131	+		PP_4553	0.30	-0.3
5,177,131	+		PP_4553	0.30	+0.4
5,177,132	-		PP_4553	0.30	-0.4
5,177,132	-		PP_4553	0.30	-0.8