Strain Fitness in Pseudomonas putida KT2440 around PP_4196

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,740,967	+				+1.1
4,740,994	-				+0.4
4,740,994	-				+0.4
4,741,084	-				-0.8
4,741,084	-				+0.6
4,741,084	-				-1.0
4,741,084	-				+0.7
4,741,142	-				+0.6
4,741,184	-				-0.2
4,741,195	+				+0.1
4,741,196	-				+0.0
4,741,197	+				-0.4
4,741,197	+				+0.6
4,741,197	+				+0.2
4,741,197	+				+0.2
4,741,198	-				+0.2
4,741,198	-				-0.1
4,741,198	-				+0.7
4,741,198	-				-0.7
4,741,198	-				+0.0
4,741,343	+				-0.3
4,741,344	-				-0.5
4,741,464	+				+0.5
4,741,465	-				+0.3
4,741,465	-				+0.9
4,741,465	-				-0.4
4,741,465	-				+1.1
4,741,465	-				+0.9
4,741,489	+				-0.6
4,741,489	+				+0.6
4,741,489	+				+0.5
4,741,490	-				-1.0
4,741,775	-				+1.3
4,741,829	+				-0.1
4,741,830	-				+0.2
4,741,986	+		PP_4196	0.20	+1.3
4,741,987	-		PP_4196	0.20	+0.6
4,741,987	-		PP_4196	0.20	+0.3
4,742,006	+		PP_4196	0.24	-2.1
4,742,366	+				+0.0
4,742,400	+				-0.4
4,742,400	+				-0.2
4,742,401	-				-0.5
4,742,480	-				+0.1
4,742,489	+				+0.4
4,742,490	-				+0.5
4,742,490	-				-0.7
4,742,541	-				-0.1
4,742,729	+		PP_4197	0.21	-1.1
4,742,729	+		PP_4197	0.21	+0.6
4,742,729	+		PP_4197	0.21	-0.7
4,742,729	+		PP_4197	0.21	-0.6
4,742,730	-		PP_4197	0.21	+0.5
4,742,770	-		PP_4197	0.23	+2.1
4,742,797	+		PP_4197	0.25	+0.2
4,742,797	+		PP_4197	0.25	+0.6
4,742,815	+		PP_4197	0.26	+0.5
4,742,914	-		PP_4197	0.32	+0.7
4,742,914	-		PP_4197	0.32	+0.4
4,742,914	-		PP_4197	0.32	+0.3
4,742,985	+		PP_4197	0.37	-0.5
4,742,985	+		PP_4197	0.37	-0.3
4,742,985	+		PP_4197	0.37	+0.7
4,742,985	+		PP_4197	0.37	+0.5
4,742,985	+				+0.1
4,742,986	-		PP_4197	0.37	+0.9
4,742,986	-		PP_4197	0.37	+0.1
4,742,986	-				+3.5
4,743,154	+		PP_4197	0.47	-1.0
4,743,225	+		PP_4197	0.52	+0.6
4,743,226	-		PP_4197	0.52	+0.0
4,743,226	-		PP_4197	0.52	+0.8
4,743,226	-		PP_4197	0.52	+0.2
4,743,228	+		PP_4197	0.52	+1.1
4,743,228	+		PP_4197	0.52	-0.4
4,743,228	+		PP_4197	0.52	-1.0
4,743,229	-		PP_4197	0.52	-0.9