Strain Fitness in Pseudomonas putida KT2440 around PP_3647

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
4,142,492	+		PP_3646	0.42	+0.9
4,142,583	+		PP_3646	0.48	-0.1
4,142,702	+		PP_3646	0.56	+0.9
4,142,702	+		PP_3646	0.56	+0.7
4,142,702	+		PP_3646	0.56	+0.0
4,142,703	-		PP_3646	0.56	-1.0
4,142,703	-		PP_3646	0.56	+0.0
4,142,966	+		PP_3646	0.74	-0.8
4,142,967	-		PP_3646	0.74	+0.4
4,142,967	-		PP_3646	0.74	-1.2
4,143,192	-		PP_3646	0.89	+0.8
4,143,219	+				-0.6
4,143,219	+				+1.4
4,143,220	-				-0.4
4,143,279	-				-0.3
4,143,279	-				-0.3
4,143,347	+				-0.3
4,143,347	+				-1.3
4,143,348	-				+0.2
4,143,348	-				-0.1
4,143,380	+				-0.1
4,143,521	+		PP_3647	0.33	+1.8
4,143,537	-		PP_3647	0.36	+0.4
4,143,605	+		PP_3647	0.50	+1.1
4,143,606	-		PP_3647	0.50	-0.4
4,143,725	+		PP_3647	0.75	+0.2
4,143,806	+				+0.1
4,143,806	+				+0.6
4,143,806	+				-1.2
4,143,807	-				-0.2
4,143,848	+				-0.5
4,143,848	+				-1.4
4,143,848	+				+1.2
4,143,849	-				-0.5
4,143,849	-				-0.3
4,143,849	-				+0.7
4,143,849	-				+0.4
4,143,963	-				+2.2
4,143,963	-				-0.7
4,144,030	+		PP_3648	0.15	-0.4
4,144,031	-		PP_3648	0.16	-1.1
4,144,031	-		PP_3648	0.16	-0.5
4,144,096	+		PP_3648	0.32	+0.1
4,144,096	+		PP_3648	0.32	-0.5
4,144,097	-		PP_3648	0.33	-1.0
4,144,155	-		PP_3648	0.47	+0.2
4,144,155	-		PP_3648	0.47	-0.8
4,144,276	+		PP_3648	0.78	+0.8
4,144,276	+		PP_3648	0.78	+0.1
4,144,276	+		PP_3648	0.78	-1.4
4,144,434	-				-1.1
4,144,434	-				-0.8
4,144,499	-				-0.6
4,144,620	+		PP_3649	0.23	-0.1
4,144,724	+		PP_3649	0.37	+0.3
4,144,724	+		PP_3649	0.37	-0.6
4,144,724	+		PP_3649	0.37	-1.4
4,144,724	+		PP_3649	0.37	-1.1
4,144,725	-		PP_3649	0.37	+0.5
4,144,725	-		PP_3649	0.37	+0.4
4,144,725	-		PP_3649	0.37	+0.4
4,144,725	-		PP_3649	0.37	-0.1