Strain Fitness in Pseudomonas putida KT2440 around PP_3432

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,887,881	+				+0.7
3,887,881	+				-0.9
3,887,927	+				+0.7
3,887,927	+				+0.6
3,887,927	+				+0.7
3,887,927	+				-0.2
3,887,927	+				-2.8
3,887,927	+				+0.5
3,887,927	+				-0.7
3,887,928	-				-0.4
3,887,928	-				-0.3
3,887,928	-				-0.1
3,887,932	+				+0.4
3,887,932	+				-0.4
3,887,932	+				-1.1
3,887,933	-				-0.1
3,887,933	-				+0.1
3,887,937	-				-0.3
3,887,937	-				+0.4
3,888,028	+				-0.1
3,888,028	+				+0.6
3,888,028	+				-3.3
3,888,038	+				+0.9
3,888,038	+				-0.8
3,888,039	-				-0.6
3,888,117	-		PP_3431	0.18	+1.4
3,888,128	+		PP_3431	0.19	-0.2
3,888,128	+		PP_3431	0.19	-0.1
3,888,128	+		PP_3431	0.19	+0.4
3,888,241	+		PP_3431	0.36	+1.5
3,888,242	-		PP_3431	0.36	-0.4
3,888,242	-		PP_3431	0.36	+0.5
3,888,276	-		PP_3431	0.41	-0.1
3,888,276	-		PP_3431	0.41	-0.4
3,888,276	-		PP_3431	0.41	-1.3
3,888,287	+		PP_3431	0.42	-0.3
3,888,288	-		PP_3431	0.43	+1.2
3,888,288	-		PP_3431	0.43	-1.2
3,888,290	+		PP_3431	0.43	+0.2
3,888,291	-		PP_3431	0.43	+0.8
3,888,315	-		PP_3431	0.46	-1.3
3,888,315	-		PP_3431	0.46	-0.0
3,888,402	+		PP_3431	0.59	-0.2
3,888,430	+		PP_3431	0.63	-0.1
3,888,480	+		PP_3431	0.70	-0.3
3,888,480	+		PP_3431	0.70	+1.0
3,888,510	+		PP_3431	0.75	+1.4
3,888,510	+		PP_3431	0.75	+0.4
3,888,511	-		PP_3431	0.75	+0.1
3,888,511	-		PP_3431	0.75	-0.5
3,888,511	-		PP_3431	0.75	-0.3
3,888,511	-		PP_3431	0.75	+0.2
3,888,558	-				-0.5
3,888,588	-		PP_3431	0.86	-0.4
3,888,588	-		PP_3431	0.86	-1.3
3,888,680	+				-0.7
3,888,680	+				+1.1
3,888,684	+				+1.9
3,888,730	-				+0.8
3,888,750	+				-0.4
3,888,751	-				-0.6
3,888,751	-				+0.5
3,888,754	+				+1.9
3,888,754	+				+0.1
3,888,755	-				+0.3
3,888,755	-				+0.1
3,888,803	+				+0.2
3,888,803	+				+0.8
3,888,803	+				+0.1
3,888,803	+				+0.4
3,888,803	+				-0.2
3,888,804	-				+0.9
3,888,804	-				-0.5
3,888,804	-				+0.2
3,888,806	+				+0.5
3,888,806	+				+0.8
3,888,811	+				+0.5
3,888,811	+				-0.6
3,888,811	+				+0.6
3,888,811	+				+1.0
3,888,812	-				-0.4
3,888,812	-				+0.6
3,888,812	-				+0.5
3,888,812	-				+0.3
3,889,045	+		PP_3432	0.29	+0.5
3,889,127	+		PP_3432	0.39	+0.8
3,889,127	+		PP_3432	0.39	-0.5
3,889,128	-		PP_3432	0.39	+1.1
3,889,160	+		PP_3432	0.43	-0.2
3,889,161	-		PP_3432	0.43	+0.6
3,889,202	+		PP_3432	0.48	+0.4
3,889,264	+		PP_3432	0.56	-0.5
3,889,264	+		PP_3432	0.56	-1.1
3,889,264	+		PP_3432	0.56	+0.4
3,889,264	+		PP_3432	0.56	-0.8
3,889,265	-		PP_3432	0.56	+0.5
3,889,283	+		PP_3432	0.58	-0.2
3,889,283	+		PP_3432	0.58	+2.4
3,889,284	-		PP_3432	0.58	-0.5
3,889,284	-		PP_3432	0.58	-0.8
3,889,358	+		PP_3432	0.68	+0.1
3,889,358	+		PP_3432	0.68	-0.8
3,889,358	+		PP_3432	0.68	+0.6
3,889,358	+		PP_3432	0.68	+0.7
3,889,359	-		PP_3432	0.68	-1.4
3,889,359	-		PP_3432	0.68	-0.6
3,889,362	+		PP_3432	0.68	-0.9
3,889,362	+		PP_3432	0.68	-0.4
3,889,362	+		PP_3432	0.68	+2.6
3,889,362	+		PP_3432	0.68	+0.0
3,889,362	+		PP_3432	0.68	+0.4
3,889,417	+		PP_3432	0.75	+0.6
3,889,418	-		PP_3432	0.75	+2.5
3,889,440	-		PP_3432	0.78	+1.6
3,889,445	+		PP_3432	0.78	+3.4
3,889,491	+				-1.2
3,889,628	+				+0.9
3,889,628	+				+0.2
3,889,628	+				+0.5
3,889,670	-				-0.0
3,889,905	-		PP_3433	0.24	+0.4
3,889,905	-		PP_3433	0.24	+0.4
3,890,129	+		PP_3433	0.45	+0.7
3,890,129	+		PP_3433	0.45	-0.7
3,890,150	+		PP_3433	0.47	+0.2
3,890,184	-		PP_3433	0.50	+0.2
3,890,206	-		PP_3433	0.52	+0.1
3,890,206	-		PP_3433	0.52	-1.0
3,890,217	-		PP_3433	0.53	-0.9
3,890,224	-		PP_3433	0.54	-1.8
3,890,306	+		PP_3433	0.62	+0.2
3,890,306	+		PP_3433	0.62	+0.4
3,890,306	+		PP_3433	0.62	+0.9
3,890,307	-		PP_3433	0.62	-1.8
3,890,310	+		PP_3433	0.62	-1.1
3,890,310	+		PP_3433	0.62	+0.2
3,890,342	+		PP_3433	0.65	-1.0
3,890,343	-		PP_3433	0.65	+0.4
3,890,343	-		PP_3433	0.65	+2.5
3,890,343	-		PP_3433	0.65	-0.1
3,890,444	+		PP_3433	0.74	-0.2
3,890,445	-		PP_3433	0.75	+1.1
3,890,445	-		PP_3433	0.75	-0.2
3,890,445	-		PP_3433	0.75	+0.5
3,890,485	+		PP_3433	0.78	-0.3
3,890,514	-		PP_3433	0.81	-1.3