Strain Fitness in Pseudomonas putida KT2440 around PP_3419

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,868,856	+		PP_3417	0.83	+0.2
3,868,909	+		PP_3417	0.87	-0.3
3,868,981	-				-0.7
3,868,981	-				-0.6
3,868,981	-				-0.3
3,869,101	+				-0.1
3,869,140	+				-0.1
3,869,140	+				+0.3
3,869,140	+				+0.4
3,869,141	-				+1.0
3,869,141	-				+0.1
3,869,141	-				+0.9
3,869,141	-				-0.3
3,869,156	-				-0.7
3,869,156	-				+1.3
3,869,347	-		PP_3418	0.57	-1.5
3,869,467	+				+1.1
3,869,490	-				-0.4
3,869,490	-				+0.8
3,869,492	+				+0.6
3,869,832	+		PP_3419	0.24	+0.3
3,869,832	+		PP_3419	0.24	+1.1
3,869,832	+		PP_3419	0.24	-0.0
3,869,832	+		PP_3419	0.24	+0.8
3,869,833	-		PP_3419	0.24	+0.8
3,869,833	-		PP_3419	0.24	+0.1
3,870,184	-		PP_3419	0.49	+0.8
3,870,601	+		PP_3419	0.78	-0.2
3,870,839	+				+0.5
3,870,840	-				+0.1
3,870,857	+				+0.3
3,870,858	-				+0.0
3,870,938	-				-1.2
3,870,946	+				+0.2
3,870,946	+				+0.3
3,870,947	-				-0.5
3,870,947	-				+0.6
3,870,947	-				+0.4
3,870,947	-				+1.3
3,871,508	+		PP_3420	0.42	+0.9
3,871,508	+		PP_3420	0.42	+0.5
3,871,509	-		PP_3420	0.42	-0.2
3,871,509	-		PP_3420	0.42	+1.7
3,871,509	-		PP_3420	0.42	+0.4
3,871,572	+		PP_3420	0.46	+0.3
3,871,573	-		PP_3420	0.46	+1.2
3,871,615	+		PP_3420	0.49	-0.8
3,871,615	+		PP_3420	0.49	+3.0
3,871,615	+		PP_3420	0.49	-0.5
3,871,615	+		PP_3420	0.49	-1.2
3,871,615	+		PP_3420	0.49	-0.7
3,871,615	+		PP_3420	0.49	+1.8
3,871,615	+		PP_3420	0.49	+0.2
3,871,615	+		PP_3420	0.49	+0.3
3,871,615	+		PP_3420	0.49	-0.8
3,871,616	-		PP_3420	0.49	+1.1
3,871,616	-		PP_3420	0.49	-0.4
3,871,616	-		PP_3420	0.49	-0.2
3,871,616	-		PP_3420	0.49	-0.7
3,871,616	-		PP_3420	0.49	+0.0
3,871,653	+		PP_3420	0.51	+0.8
3,871,653	+		PP_3420	0.51	-0.6
3,871,654	-		PP_3420	0.51	-1.0
3,871,654	-		PP_3420	0.51	+2.5
3,871,698	+		PP_3420	0.54	-0.8
3,871,699	-		PP_3420	0.54	+0.8
3,871,761	-		PP_3420	0.59	+0.4
3,871,761	-		PP_3420	0.59	+0.3
3,871,794	+		PP_3420	0.61	-0.3
3,871,812	+		PP_3420	0.62	-1.0
3,871,813	-		PP_3420	0.62	+0.2
3,871,813	-		PP_3420	0.62	-0.3
3,871,867	-		PP_3420	0.66	-0.0
3,871,867	-		PP_3420	0.66	+0.2