Strain Fitness in Pseudomonas putida KT2440 around PP_2862

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,264,001	+		PP_2861	0.67	-0.2
3,264,001	+		PP_2861	0.67	+0.1
3,264,002	-		PP_2861	0.67	+0.4
3,264,002	-		PP_2861	0.67	+0.5
3,264,014	+		PP_2861	0.67	-0.6
3,264,015	-		PP_2861	0.67	+0.1
3,264,015	-		PP_2861	0.67	-0.2
3,264,015	-		PP_2861	0.67	-0.1
3,264,062	+		PP_2861	0.70	-0.1
3,264,063	-		PP_2861	0.70	-0.0
3,264,063	-		PP_2861	0.70	-1.2
3,264,110	+		PP_2861	0.73	-0.0
3,264,111	-		PP_2861	0.73	+0.9
3,264,285	-		PP_2861	0.84	+0.4
3,264,301	+		PP_2861	0.85	-0.2
3,264,302	-		PP_2861	0.85	-0.8
3,264,365	+		PP_2861	0.89	-0.6
3,264,365	+		PP_2861	0.89	-0.9
3,264,366	-		PP_2861	0.89	+0.2
3,264,368	+		PP_2861	0.89	-0.7
3,264,368	+		PP_2861	0.89	+0.1
3,264,369	-		PP_2861	0.89	-1.2
3,264,429	-				+1.4
3,264,619	-				+1.2
3,264,632	+				-0.9
3,264,633	-				+2.0
3,264,633	-				+1.8
3,264,643	+				+0.0
3,264,662	+				+0.2
3,264,718	-				+1.1
3,264,782	-				+2.0
3,264,939	+		PP_2862	0.11	+1.0
3,264,940	-		PP_2862	0.12	+2.0
3,265,133	+		PP_2862	0.35	+2.0
3,265,133	+		PP_2862	0.35	+0.6
3,265,158	+		PP_2862	0.38	+2.7
3,265,158	+		PP_2862	0.38	+2.2
3,265,168	+		PP_2862	0.39	+2.0
3,265,169	-		PP_2862	0.39	+2.5
3,265,450	+		PP_2862	0.73	+1.8
3,265,450	+		PP_2862	0.73	+2.7
3,265,451	-		PP_2862	0.73	+1.3
3,265,451	-		PP_2862	0.73	+2.5
3,265,459	+		PP_2862	0.74	+2.2
3,265,465	+		PP_2862	0.74	+2.9
3,265,547	+		PP_2862	0.84	+2.0
3,265,579	-		PP_2862	0.88	+1.3
3,265,579	-		PP_2862	0.88	+1.4
3,265,579	-				+0.5
3,265,579	-		PP_2862	0.88	+1.3
3,265,582	+		PP_2862	0.88	+2.1
3,265,583	-		PP_2862	0.89	+1.0
3,265,850	+		PP_2863	0.38	-0.5
3,265,851	-		PP_2863	0.38	-0.6
3,265,876	+		PP_2863	0.45	+2.7
3,265,876	+		PP_2863	0.45	-1.0
3,265,877	-		PP_2863	0.45	+0.5
3,265,891	+		PP_2863	0.49	+0.7
3,265,892	-		PP_2863	0.49	+1.5
3,265,892	-		PP_2863	0.49	-0.8
3,266,067	-				+1.4
3,266,067	-				+0.6
3,266,095	-				-1.7
3,266,187	+		PP_2864	0.12	-0.2
3,266,188	-		PP_2864	0.12	+0.9
3,266,281	+		PP_2864	0.37	+0.7
3,266,428	+		PP_2864	0.77	-0.1
3,266,501	+				+1.9
3,266,501	+				+0.2
3,266,501	+				+0.6
3,266,501	+				-2.1
3,266,502	-				-1.3
3,266,502	-				+0.5
3,266,502	-				+0.3
3,266,601	-		PP_2865	0.12	+1.3