Strain Fitness in Pseudomonas putida KT2440 around PP_2737

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,119,832	-		PP_2736	0.32	+1.2
3,120,045	-		PP_2736	0.49	-0.4
3,120,194	-		PP_2736	0.61	-1.3
3,120,194	-		PP_2736	0.61	+0.6
3,120,200	+		PP_2736	0.61	-0.9
3,120,201	-		PP_2736	0.61	+0.7
3,120,201	-		PP_2736	0.61	-0.2
3,120,201	-		PP_2736	0.61	-1.2
3,120,201	-		PP_2736	0.61	-1.2
3,120,396	+		PP_2736	0.77	+0.3
3,120,398	+		PP_2736	0.77	+0.7
3,120,398	+		PP_2736	0.77	-0.3
3,120,494	+		PP_2736	0.85	+0.7
3,120,495	-		PP_2736	0.85	+0.0
3,120,526	-		PP_2736	0.87	-0.6
3,120,529	+		PP_2736	0.88	-0.1
3,120,530	-		PP_2736	0.88	+1.0
3,120,530	-		PP_2736	0.88	+0.2
3,120,530	-		PP_2736	0.88	+1.4
3,120,530	-		PP_2736	0.88	-1.0
3,120,677	-				-0.4
3,120,678	+				-0.8
3,120,679	-				-1.8
3,120,679	-				-0.1
3,120,831	+		PP_2737	0.19	+1.1
3,121,182	-		PP_2737	0.65	+0.3
3,121,407	+				+0.5
3,121,498	+		PP_2738	0.14	+1.5
3,121,637	-		PP_2738	0.47	+0.6
3,121,678	+		PP_2738	0.56	-0.6
3,121,703	-		PP_2738	0.62	-0.6
3,121,718	-		PP_2738	0.66	-0.6
3,121,718	-		PP_2738	0.66	-1.0
3,121,743	+		PP_2738	0.72	-0.8
3,121,808	+		PP_2738	0.87	-0.2
3,121,848	+				-0.9
3,121,848	+				+0.2
3,121,848	+				-0.1
3,121,853	-				+0.7
3,121,862	+				-0.3
3,121,862	+				-0.5
3,121,862	+				-0.2
3,121,863	-				-0.1
3,121,863	-				-1.8
3,121,908	+				-1.5
3,122,078	+		PP_2739	0.25	-0.3
3,122,078	+		PP_2739	0.25	-0.9
3,122,079	-		PP_2739	0.25	-0.2
3,122,079	-		PP_2739	0.25	-1.4
3,122,081	+		PP_2739	0.25	-0.1
3,122,081	+		PP_2739	0.25	+0.8
3,122,081	+		PP_2739	0.25	+0.1
3,122,082	-		PP_2739	0.25	-0.4
3,122,082	-		PP_2739	0.25	+0.4
3,122,156	+		PP_2739	0.42	+1.0
3,122,272	-		PP_2739	0.67	+0.1
3,122,272	-		PP_2739	0.67	+0.3
3,122,318	+		PP_2739	0.77	+0.4
3,122,318	+		PP_2739	0.77	+0.4
3,122,318	+		PP_2739	0.77	-1.4
3,122,322	+		PP_2739	0.78	-0.1
3,122,322	+		PP_2739	0.78	+0.5
3,122,322	+		PP_2739	0.78	+1.3
3,122,322	+		PP_2739	0.78	-2.2
3,122,322	+		PP_2739	0.78	+0.2
3,122,322	+		PP_2739	0.78	-0.0
3,122,323	-		PP_2739	0.78	+0.9
3,122,323	-		PP_2739	0.78	+0.1
3,122,424	-				-0.4
3,122,424	-				-0.3
3,122,424	-				+0.9