Strain Fitness in Pseudomonas putida KT2440 around PP_2735

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,117,708	-		PP_2734	0.26	-0.1
3,117,708	-		PP_2734	0.26	-0.8
3,117,717	+		PP_2734	0.27	+0.6
3,117,778	+		PP_2734	0.32	+0.6
3,117,778	+		PP_2734	0.32	-0.0
3,117,825	-		PP_2734	0.36	+0.1
3,117,836	+		PP_2734	0.37	+0.5
3,117,837	-		PP_2734	0.37	+0.0
3,117,966	+		PP_2734	0.48	-0.8
3,117,974	+		PP_2734	0.49	+1.6
3,117,974	+		PP_2734	0.49	+0.3
3,118,175	+		PP_2734	0.66	-0.1
3,118,398	-		PP_2734	0.85	+1.1
3,118,409	+		PP_2734	0.85	+0.4
3,118,737	-		PP_2735	0.13	-0.2
3,118,758	+		PP_2735	0.16	+1.4
3,118,758	+		PP_2735	0.16	+1.4
3,118,759	-		PP_2735	0.16	+0.3
3,118,806	+		PP_2735	0.22	+1.5
3,118,806	+		PP_2735	0.22	+0.3
3,118,807	-		PP_2735	0.22	+0.8
3,118,807	-		PP_2735	0.22	-1.2
3,118,904	+		PP_2735	0.34	-0.8
3,118,904	+		PP_2735	0.34	+1.5
3,118,904	+		PP_2735	0.34	-1.4
3,118,904	+		PP_2735	0.34	+1.9
3,118,904	+		PP_2735	0.34	-1.4
3,119,024	+		PP_2735	0.49	+0.7
3,119,025	-				+2.2
3,119,025	-		PP_2735	0.49	+0.8
3,119,029	-		PP_2735	0.49	-0.4
3,119,029	-		PP_2735	0.49	+1.9
3,119,352	+		PP_2735	0.89	+0.5
3,119,353	-		PP_2735	0.89	+0.5
3,119,529	-				-0.2
3,119,592	-		PP_2736	0.12	+0.0
3,119,592	-		PP_2736	0.12	-0.0
3,119,638	+		PP_2736	0.16	+0.4
3,119,638	+		PP_2736	0.16	+0.4
3,119,639	-		PP_2736	0.16	-0.3
3,119,688	+		PP_2736	0.20	-0.6
3,119,832	-		PP_2736	0.32	+1.2
3,120,045	-		PP_2736	0.49	-0.4
3,120,194	-		PP_2736	0.61	-1.3
3,120,194	-		PP_2736	0.61	+0.6
3,120,200	+		PP_2736	0.61	-0.9
3,120,201	-		PP_2736	0.61	+0.7
3,120,201	-		PP_2736	0.61	-0.2
3,120,201	-		PP_2736	0.61	-1.2
3,120,201	-		PP_2736	0.61	-1.2
3,120,396	+		PP_2736	0.77	+0.3
3,120,398	+		PP_2736	0.77	+0.7
3,120,398	+		PP_2736	0.77	-0.3