Strain Fitness in Pseudomonas putida KT2440 around PP_2433

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,779,384	+				+0.2
2,779,384	+				-1.4
2,779,419	+				+1.2
2,779,419	+				+1.1
2,779,471	+				-0.4
2,779,491	+				+0.2
2,779,492	-				+0.4
2,779,507	-				+0.1
2,779,669	-		PP_2432	0.32	+0.6
2,779,830	+		PP_2432	0.56	-0.5
2,779,830	+		PP_2432	0.56	-0.0
2,779,831	-		PP_2432	0.57	+0.2
2,779,891	-		PP_2432	0.66	+0.5
2,779,905	-		PP_2432	0.68	+0.1
2,779,905	-		PP_2432	0.68	-0.9
2,780,287	+		PP_2433	0.12	+1.0
2,780,396	+		PP_2433	0.35	+0.8
2,780,396	+		PP_2433	0.35	+1.9
2,780,727	+				+0.9
2,780,728	-				+2.6
2,780,761	+		PP_2434	0.13	-0.1
2,780,762	-		PP_2434	0.13	+0.4
2,780,762	-		PP_2434	0.13	+0.4
2,780,762	-		PP_2434	0.13	-0.7
2,780,799	+		PP_2434	0.22	+0.2
2,780,799	+		PP_2434	0.22	-0.7
2,780,800	-		PP_2434	0.22	-1.6
2,780,800	-		PP_2434	0.22	+1.7
2,780,800	-		PP_2434	0.22	-0.4
2,780,874	-		PP_2434	0.39	-0.8
2,781,057	+		PP_2434	0.81	+0.4
2,781,057	+		PP_2434	0.81	-1.3
2,781,057	+		PP_2434	0.81	-0.5
2,781,057	+		PP_2434	0.81	-0.6
2,781,138	+				+0.2
2,781,139	-				-0.1
2,781,653	+		PP_2435	0.41	+0.1
2,781,653	+		PP_2435	0.41	+1.0
2,781,654	-		PP_2435	0.42	+1.0
2,781,654	-		PP_2435	0.42	-0.1
2,781,654	-		PP_2435	0.42	+1.1
2,781,681	-		PP_2435	0.44	-0.1