Strain Fitness in Pseudomonas putida KT2440 around PP_2148

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,450,886	-				+1.5
2,450,994	+				-0.5
2,450,995	-				-1.4
2,451,088	+				-1.2
2,451,088	+				+0.4
2,451,088	+				-1.6
2,451,089	-				+0.4
2,451,427	+		PP_2147	0.59	+0.6
2,451,589	+		PP_2147	0.88	-0.1
2,451,590	-		PP_2147	0.88	+0.4
2,451,590	-		PP_2147	0.88	+0.6
2,451,713	+				+0.3
2,451,781	+				+0.9
2,451,781	+				+1.1
2,451,782	-				-0.7
2,452,066	+		PP_2148	0.12	-0.0
2,452,066	+		PP_2148	0.12	+1.1
2,452,067	-		PP_2148	0.12	+1.1
2,452,067	-		PP_2148	0.12	-0.5
2,452,189	+		PP_2148	0.15	-0.4
2,452,361	+		PP_2148	0.20	+0.5
2,452,361	+		PP_2148	0.20	-0.7
2,452,375	+		PP_2148	0.20	+0.5
2,452,375	+		PP_2148	0.20	+1.3
2,452,541	-		PP_2148	0.25	-0.4
2,452,673	-		PP_2148	0.29	-0.4
2,452,675	+		PP_2148	0.29	-0.5
2,452,676	-		PP_2148	0.29	-0.2
2,452,676	-		PP_2148	0.29	+0.5
2,452,676	-		PP_2148	0.29	+0.5
2,452,959	+		PP_2148	0.37	-0.2
2,452,959	+		PP_2148	0.37	+1.4
2,452,959	+		PP_2148	0.37	+0.0
2,452,960	-		PP_2148	0.37	+0.6
2,453,116	+		PP_2148	0.42	-0.5
2,453,117	-		PP_2148	0.42	+1.3
2,453,117	-		PP_2148	0.42	+0.3
2,453,117	-		PP_2148	0.42	+0.5
2,453,117	-		PP_2148	0.42	+1.1
2,453,344	+		PP_2148	0.49	+2.6
2,453,344	+		PP_2148	0.49	+0.6
2,453,345	-		PP_2148	0.49	+1.4
2,453,398	+		PP_2148	0.50	-0.4
2,453,398	+		PP_2148	0.50	-0.5
2,453,398	+				-0.0
2,453,398	+		PP_2148	0.50	+1.1
2,453,399	-		PP_2148	0.50	+0.8
2,453,399	-		PP_2148	0.50	+0.4
2,453,554	+		PP_2148	0.55	+1.9
2,453,554	+		PP_2148	0.55	+0.4
2,453,554	+		PP_2148	0.55	+2.1
2,453,554	+		PP_2148	0.55	+1.3
2,453,554	+		PP_2148	0.55	+1.3
2,453,554	+		PP_2148	0.55	+0.4
2,453,555	-		PP_2148	0.55	-0.8
2,453,892	-		PP_2148	0.64	+1.0
2,454,214	+		PP_2148	0.74	+0.9
2,454,215	-		PP_2148	0.74	+0.8
2,454,298	+		PP_2148	0.76	-1.0
2,454,298	+		PP_2148	0.76	+1.2
2,454,298	+		PP_2148	0.76	+1.0
2,454,340	+		PP_2148	0.77	-0.6
2,454,340	+		PP_2148	0.77	+0.8
2,454,341	-		PP_2148	0.77	-0.0
2,454,341	-		PP_2148	0.77	-1.2
2,454,343	+		PP_2148	0.78	-0.1
2,454,344	-				-1.6
2,454,344	-		PP_2148	0.78	+2.6
2,454,832	+				+0.7
2,454,886	+				+0.3
2,455,258	+				+1.0
2,455,283	+				-0.1
2,455,284	-				-2.2