Strain Fitness in Pseudomonas putida KT2440 around PP_2136

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,436,562	+				+0.7
2,436,605	+				+1.0
2,436,605	+				-0.3
2,436,605	+				-0.1
2,436,702	+				-1.5
2,436,702	+				+1.4
2,436,726	+				+0.9
2,436,727	-				-1.4
2,436,727	-				+1.5
2,436,761	+				+0.2
2,436,762	-				+0.2
2,436,762	-				+0.3
2,436,762	-				+0.1
2,436,950	+				+0.7
2,436,950	+				+0.3
2,436,951	-				+1.1
2,436,951	-				+1.7
2,436,971	-				+0.3
2,436,971	-				+0.4
2,436,971	-				-1.4
2,436,981	-				+2.4
2,437,017	-				+0.8
2,437,017	-				-0.2
2,437,047	+				+0.6
2,437,048	-				+2.9
2,437,087	+				+0.3
2,437,087	+				-1.2
2,437,095	+				+2.0
2,437,516	+		PP_2136	0.20	-0.5
2,437,516	+		PP_2136	0.20	+3.3
2,437,714	+		PP_2136	0.29	+0.7
2,437,714	+		PP_2136	0.29	+1.6
2,438,071	+		PP_2136	0.46	+2.5
2,438,312	+		PP_2136	0.57	+1.6
2,438,522	-		PP_2136	0.67	+1.5
2,438,695	+		PP_2136	0.75	+1.9
2,438,695	+		PP_2136	0.75	+4.1
2,438,838	+		PP_2136	0.82	+1.7
2,438,848	+		PP_2136	0.82	+0.9
2,438,848	+		PP_2136	0.82	+1.4
2,438,849	-		PP_2136	0.82	+1.6
2,438,849	-		PP_2136	0.82	+2.2
2,439,058	+				+1.5
2,439,148	+				+1.1
2,439,149	-				-0.2
2,439,149	-				+2.0
2,439,242	+				+0.4
2,439,243	-				+0.4
2,439,243	-				+0.3
2,439,243	-				-0.5
2,439,260	-				+0.9
2,439,660	+		PP_2137	0.34	+2.2
2,439,660	+		PP_2137	0.34	+0.7
2,439,661	-		PP_2137	0.34	+2.8
2,439,854	+		PP_2137	0.51	+1.1
2,439,980	-		PP_2137	0.61	+1.0