Strain Fitness in Pseudomonas putida KT2440 around PP_2110

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,405,076	-		PP_2108	0.17	-1.6
2,405,113	+		PP_2108	0.25	-0.5
2,405,113	+		PP_2108	0.25	+0.1
2,405,114	-		PP_2108	0.25	-0.7
2,405,114	-		PP_2108	0.25	-0.7
2,405,114	-		PP_2108	0.25	-0.0
2,405,114	-		PP_2108	0.25	-0.3
2,405,114	-		PP_2108	0.25	+0.7
2,405,137	+		PP_2108	0.31	+0.3
2,405,137	+		PP_2108	0.31	-1.6
2,405,137	+		PP_2108	0.31	-1.5
2,405,466	+				-0.4
2,405,525	+				+0.0
2,405,526	-				+1.3
2,405,635	+		PP_2109	0.43	+0.2
2,405,697	+		PP_2109	0.63	-0.9
2,405,698	-		PP_2109	0.64	+0.1
2,405,698	-		PP_2109	0.64	+0.3
2,405,721	-		PP_2109	0.71	+1.0
2,405,721	-		PP_2109	0.71	-0.9
2,405,721	-		PP_2109	0.71	-0.6
2,405,730	-		PP_2109	0.74	-1.0
2,405,730	-		PP_2109	0.74	+0.4
2,405,761	-		PP_2109	0.84	-0.1
2,405,899	+				-1.9
2,406,051	-		PP_2110	0.23	+0.2
2,406,051	-		PP_2110	0.23	+0.4
2,406,051	-		PP_2110	0.23	+1.1
2,406,075	-		PP_2110	0.26	+0.2
2,406,195	-				+1.6
2,406,614	+		PP_2110	0.85	+2.3
2,406,614	+		PP_2110	0.85	-0.8
2,406,644	+				-1.1
2,406,713	+				+0.5
2,406,714	-				-0.2
2,406,827	+				-0.2
2,406,827	+				-1.9
2,406,849	+				-1.1
2,406,849	+				-0.1
2,406,849	+				+0.0
2,406,849	+				-0.4
2,406,849	+				+0.5
2,406,935	+				-1.5
2,407,199	+		PP_2111	0.13	-1.1
2,407,200	-		PP_2111	0.13	-1.2
2,407,224	+		PP_2111	0.14	+0.3
2,407,249	-		PP_2111	0.16	-0.4
2,407,668	+		PP_2111	0.43	+0.6
2,407,668	+		PP_2111	0.43	-0.3
2,407,668	+		PP_2111	0.43	+1.2
2,407,668	+		PP_2111	0.43	+0.6
2,407,669	-		PP_2111	0.43	-0.0
2,407,669	-		PP_2111	0.43	-0.2