Strain Fitness in Pseudomonas putida KT2440 around PP_2078

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
2,364,578	-		PP_2077	0.30	+1.3
2,364,589	+		PP_2077	0.31	-1.0
2,364,589	+		PP_2077	0.31	-1.0
2,364,590	-		PP_2077	0.31	+0.9
2,364,633	+		PP_2077	0.34	-0.7
2,364,634	-		PP_2077	0.34	+2.7
2,364,876	+		PP_2077	0.54	+0.7
2,365,322	+				-0.4
2,365,322	+				+0.2
2,365,322	+				-1.0
2,365,322	+				-1.6
2,365,322	+				-0.3
2,365,377	+				-0.1
2,365,377	+				+0.3
2,365,378	-				-0.8
2,365,378	-				+0.1
2,365,386	-				-0.4
2,365,386	-				+0.1
2,365,456	+				-0.1
2,365,456	+				+0.5
2,365,456	+				+0.3
2,365,456	+				-0.2
2,365,457	-				-0.5
2,365,457	-				-0.3
2,365,457	-				+1.0
2,365,457	-				-0.5
2,365,458	+				-0.1
2,365,458	+				+0.2
2,365,459	-				+0.3
2,365,459	-				-0.3
2,365,459	-				+0.3
2,365,535	-				+0.7
2,365,559	-				-0.2
2,365,784	+		PP_2078	0.24	-0.6
2,366,036	+		PP_2078	0.52	+0.2
2,366,138	+		PP_2078	0.63	+1.0
2,366,165	-		PP_2078	0.66	-0.2
2,366,377	-		PP_2078	0.90	+0.9
2,366,377	-		PP_2078	0.90	+0.8
2,366,377	-		PP_2078	0.90	+1.3
2,366,504	-				+0.4
2,366,545	-				-0.8
2,366,545	-				-0.5
2,366,657	-		PP_2079	0.22	+0.1
2,366,733	+				+2.0
2,366,734	-		PP_2079	0.39	+0.5
2,366,965	+		PP_2079	0.90	-1.7
2,366,965	+		PP_2079	0.90	+0.1
2,366,965	+		PP_2079	0.90	-0.9
2,366,965	+		PP_2079	0.90	-0.8
2,366,966	-		PP_2079	0.90	-0.4
2,366,966	-		PP_2079	0.90	+0.4
2,366,966	-		PP_2079	0.90	-0.1
2,367,016	+				+1.7
2,367,016	+				+0.9
2,367,016	+				-1.2
2,367,017	-				-0.8
2,367,088	-				+0.8
2,367,154	+				+1.8
2,367,176	-				-1.0
2,367,176	-				-0.1
2,367,420	+				+1.2
2,367,420	+				+0.6
2,367,421	-				+0.2
2,367,421	-				-0.5
2,367,432	+				-0.5
2,367,433	-				-1.2