Strain Fitness in Pseudomonas putida KT2440 around PP_1122

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,283,813	+		PP_1120	0.82	+0.1
1,283,813	+		PP_1120	0.82	-0.9
1,283,818	-		PP_1120	0.83	+0.2
1,283,977	+				+0.3
1,283,977	+				-1.0
1,283,977	+				+0.3
1,283,977	+				-0.2
1,283,978	-				+0.1
1,283,978	-				-0.5
1,283,978	-				+1.5
1,283,982	+				-0.1
1,283,982	+				+1.0
1,283,982	+				-0.0
1,283,983	-				+1.4
1,283,983	-				-0.4
1,284,013	+				+0.5
1,284,013	+				+0.4
1,284,013	+				-0.3
1,284,070	+				-1.6
1,284,070	+				+0.5
1,284,071	-				-2.1
1,284,071	-				-2.8
1,284,071	-				+0.3
1,284,071	-				+0.1
1,284,073	+				-0.4
1,284,073	+				-1.0
1,284,073	+				-0.4
1,284,073	+				-2.4
1,284,073	+				+0.6
1,284,074	-				-3.7
1,284,074	-				-1.2
1,284,094	+				+0.3
1,284,173	-		PP_1121	0.16	+0.7
1,284,173	-		PP_1121	0.16	-1.1
1,284,173	-		PP_1121	0.16	+0.2
1,284,173	-		PP_1121	0.16	-0.1
1,284,173	-		PP_1121	0.16	-1.0
1,284,255	+		PP_1121	0.28	-0.1
1,284,255	+		PP_1121	0.28	-0.5
1,284,489	-		PP_1121	0.61	+1.2
1,284,534	-		PP_1121	0.68	-0.3
1,284,534	-		PP_1121	0.68	+0.7
1,284,573	+		PP_1121	0.74	-0.9
1,284,574	-		PP_1121	0.74	-0.5
1,284,574	-		PP_1121	0.74	-0.8
1,284,574	-		PP_1121	0.74	-0.4
1,284,574	-		PP_1121	0.74	+0.7
1,284,732	-				-0.4
1,284,753	+				-0.2
1,285,068	-		PP_1122	0.37	+0.7
1,285,388	+		PP_1122	0.78	+1.0
1,285,649	+				-0.7
1,285,649	+				+0.0
1,285,649	+				-0.7
1,285,649	+				+0.8
1,285,649	+				-0.2
1,285,649	+				-2.4
1,285,649	+				+0.8
1,285,649	+				+0.3
1,285,649	+				+0.1
1,285,649	+				+0.0
1,285,649	+				+0.7
1,285,650	-				+0.7
1,285,650	-				+0.2
1,285,650	-				-0.6
1,285,650	-				-0.1
1,285,650	-				-0.5
1,285,650	-				-0.8
1,285,650	-				+1.4
1,285,650	-				-0.3
1,285,650	-				+0.5
1,285,650	-				+1.3
1,285,662	+				-0.1
1,286,266	+		PP_1124	0.45	-0.7
1,286,267	-		PP_1124	0.46	-0.6
1,286,267	-		PP_1124	0.46	-0.6
1,286,322	+		PP_1124	0.57	-1.7
1,286,322	+		PP_1124	0.57	-0.1
1,286,469	+		PP_1124	0.89	+0.5
1,286,497	+				+1.1
1,286,497	+				+0.1
1,286,557	-				-0.4
1,286,557	-				-0.1
1,286,561	+				+0.4
1,286,561	+				+1.9