Strain Fitness in Pseudomonas putida KT2440 around PP_0989

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0988 and PP_0989 are separated by 11 nucleotidesPP_0989 and PP_0990 are separated by 303 nucleotidesPP_0990 and PP_0991 are separated by 73 nucleotides PP_0988: PP_0988 - glycine dehydrogenase, at 1,126,695 to 1,129,550 _0988 PP_0989: PP_0989 - glycine cleavage system H protein 1, at 1,129,562 to 1,129,945 _0989 PP_0990: PP_0990 - DoxX family protein, at 1,130,249 to 1,130,635 _0990 PP_0991: PP_0991 - conserved protein of unknown function, at 1,130,709 to 1,131,482 _0991 Position (kb) 1129 1130Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.703 kb on + strand, within PP_0988at 1128.704 kb on - strand, within PP_0988at 1129.217 kb on - strand, within PP_0988at 1129.225 kb on + strand, within PP_0988at 1129.225 kb on + strand, within PP_0988at 1129.226 kb on - strand, within PP_0988at 1129.234 kb on + strand, within PP_0988at 1129.235 kb on - strand, within PP_0988at 1129.291 kb on + strandat 1129.291 kb on + strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.294 kb on + strandat 1129.309 kb on + strandat 1129.503 kb on + strandat 1129.504 kb on - strandat 1129.504 kb on - strandat 1129.504 kb on - strandat 1129.596 kb on + strandat 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.864 kb on - strand, within PP_0989at 1130.002 kb on - strandat 1130.002 kb on - strandat 1130.083 kb on - strandat 1130.086 kb on + strandat 1130.087 kb on - strandat 1130.207 kb on + strandat 1130.493 kb on - strand, within PP_0990at 1130.493 kb on - strand, within PP_0990at 1130.505 kb on + strand, within PP_0990at 1130.506 kb on - strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strandat 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.539 kb on + strand, within PP_0990at 1130.539 kb on + strand, within PP_0990at 1130.539 kb on + strandat 1130.540 kb on - strand, within PP_0990at 1130.540 kb on - strand, within PP_0990at 1130.901 kb on + strand, within PP_0991at 1130.901 kb on + strand, within PP_0991at 1130.901 kb on + strand, within PP_0991at 1130.902 kb on - strand, within PP_0991at 1130.902 kb on - strand, within PP_0991

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
remove
1,128,703 + PP_0988 0.70 -0.0
1,128,704 - PP_0988 0.70 -0.7
1,129,217 - PP_0988 0.88 +0.2
1,129,225 + PP_0988 0.89 -1.1
1,129,225 + PP_0988 0.89 -0.8
1,129,226 - PP_0988 0.89 +0.8
1,129,234 + PP_0988 0.89 +0.2
1,129,235 - PP_0988 0.89 +0.4
1,129,291 + +0.6
1,129,291 + +0.7
1,129,292 - +0.5
1,129,292 - +0.4
1,129,292 - +0.4
1,129,292 - -0.2
1,129,292 - -0.3
1,129,294 + -0.8
1,129,309 + +0.5
1,129,503 + -1.9
1,129,504 - -1.2
1,129,504 - -2.4
1,129,504 - +0.6
1,129,596 + +1.3
1,129,749 + PP_0989 0.49 +0.3
1,129,749 + PP_0989 0.49 +0.7
1,129,749 + PP_0989 0.49 +1.7
1,129,749 + PP_0989 0.49 -0.8
1,129,864 - PP_0989 0.79 +0.4
1,130,002 - +0.4
1,130,002 - -0.7
1,130,083 - +0.3
1,130,086 + -0.2
1,130,087 - +0.8
1,130,207 + -0.2
1,130,493 - PP_0990 0.63 +0.4
1,130,493 - PP_0990 0.63 -0.4
1,130,505 + PP_0990 0.66 -1.8
1,130,506 - PP_0990 0.66 -0.1
1,130,526 + PP_0990 0.72 -1.2
1,130,526 + -1.1
1,130,526 + PP_0990 0.72 -0.4
1,130,526 + PP_0990 0.72 -0.6
1,130,526 + PP_0990 0.72 +1.4
1,130,527 - PP_0990 0.72 +0.2
1,130,527 - PP_0990 0.72 +0.1
1,130,527 - PP_0990 0.72 -0.1
1,130,527 - PP_0990 0.72 -0.2
1,130,539 + PP_0990 0.75 +0.3
1,130,539 + PP_0990 0.75 +0.1
1,130,539 + +2.4
1,130,540 - PP_0990 0.75 -2.6
1,130,540 - PP_0990 0.75 -0.0
1,130,901 + PP_0991 0.25 -1.3
1,130,901 + PP_0991 0.25 -1.4
1,130,901 + PP_0991 0.25 +2.0
1,130,902 - PP_0991 0.25 +0.3
1,130,902 - PP_0991 0.25 -0.6

Or see this region's nucleotide sequence