Strain Fitness in Pseudomonas putida KT2440 around PP_0959

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,099,649	+				+0.4
1,099,649	+				+0.6
1,099,718	+				-0.7
1,099,718	+				+1.1
1,099,719	-				-1.7
1,099,719	-				-0.9
1,099,720	+				-0.1
1,099,720	+				+1.5
1,099,720	+				+0.1
1,099,720	+				+1.4
1,099,720	+				-0.9
1,099,721	-				-0.2
1,099,721	-				+0.9
1,099,721	-				-2.9
1,099,721	-				-1.1
1,099,721	-				-1.8
1,099,721	-				+0.0
1,099,721	-				-1.9
1,099,721	-				+0.5
1,099,783	+				-0.9
1,099,783	+				-0.9
1,099,799	+				+1.4
1,099,800	-				-1.5
1,099,811	+				+1.9
1,099,812	-				+0.0
1,099,855	-				+0.6
1,100,007	+		PP_0958	0.24	+0.5
1,100,007	+		PP_0958	0.24	-0.7
1,100,008	-		PP_0958	0.24	-0.0
1,100,008	-		PP_0958	0.24	+0.6
1,100,008	-		PP_0958	0.24	-0.4
1,100,152	+		PP_0958	0.42	-1.1
1,100,153	-		PP_0958	0.42	-0.4
1,100,316	-		PP_0958	0.62	-0.6
1,100,453	+		PP_0958	0.79	-1.8
1,100,453	+		PP_0958	0.79	-1.5
1,100,454	-		PP_0958	0.79	+0.2
1,100,459	+		PP_0958	0.80	+0.6
1,100,459	+		PP_0958	0.80	+0.0
1,100,459	+		PP_0958	0.80	-2.4
1,100,459	+		PP_0958	0.80	-2.3
1,100,460	-		PP_0958	0.80	-0.3
1,100,460	-		PP_0958	0.80	+0.6
1,100,460	-		PP_0958	0.80	+0.5
1,100,460	-		PP_0958	0.80	+1.9
1,100,460	-		PP_0958	0.80	-1.1
1,100,460	-		PP_0958	0.80	-1.2
1,100,466	+		PP_0958	0.80	-1.7
1,100,466	+		PP_0958	0.80	-0.6
1,100,467	-		PP_0958	0.81	-0.3
1,100,467	-		PP_0958	0.81	+0.8
1,100,742	+		PP_0959	0.15	-0.2
1,100,780	-		PP_0959	0.20	+1.2
1,100,876	-		PP_0959	0.32	+1.6
1,101,059	-		PP_0959	0.55	-0.6
1,101,133	-		PP_0959	0.64	+0.8
1,101,356	-				-0.2
1,101,356	-				-0.7
1,101,388	-				-1.1
1,101,388	-				+0.2
1,101,388	-				+0.9
1,101,533	+		PP_0960	0.23	-0.8
1,101,533	+		PP_0960	0.23	+0.6
1,101,533	+		PP_0960	0.23	-1.3
1,101,534	-		PP_0960	0.23	-1.9
1,101,534	-		PP_0960	0.23	-0.8
1,101,534	-		PP_0960	0.23	+0.6
1,101,534	-		PP_0960	0.23	-0.4
1,101,534	-				+0.6
1,101,538	-		PP_0960	0.24	+0.8
1,101,538	-		PP_0960	0.24	+0.2
1,101,538	-		PP_0960	0.24	+1.2
1,101,540	-		PP_0960	0.25	-0.9
1,101,552	+		PP_0960	0.27	-2.1
1,101,552	+		PP_0960	0.27	-0.2
1,101,553	-		PP_0960	0.27	-0.3
1,101,751	-		PP_0960	0.68	-3.3
1,101,899	+				+0.2
1,101,903	+				-0.3
1,101,903	+				+0.4
1,101,903	+				-0.1
1,101,903	+				-1.5
1,101,904	-				+0.3
1,101,910	+				-0.5
1,101,910	+				-0.3
1,101,910	+				+0.1
1,101,911	-				-0.9
1,101,911	-				-0.3
1,102,056	+		PP_0961	0.22	-0.6
1,102,057	-		PP_0961	0.22	-1.9
1,102,080	+		PP_0961	0.25	-0.2
1,102,080	+		PP_0961	0.25	-0.8
1,102,081	-		PP_0961	0.26	-1.0
1,102,081	-		PP_0961	0.26	-0.6
1,102,081	-		PP_0961	0.26	-0.1
1,102,155	+		PP_0961	0.37	-0.5
1,102,156	-		PP_0961	0.37	-0.8
1,102,227	+		PP_0961	0.48	-2.2
1,102,228	-		PP_0961	0.48	-0.0
1,102,228	-		PP_0961	0.48	+0.2
1,102,228	-		PP_0961	0.48	-0.4
1,102,248	+		PP_0961	0.51	+1.0
1,102,249	-		PP_0961	0.52	-1.7
1,102,249	-		PP_0961	0.52	-2.1
1,102,249	-		PP_0961	0.52	-0.6
1,102,253	+		PP_0961	0.52	+0.7
1,102,253	+		PP_0961	0.52	-0.4
1,102,254	-		PP_0961	0.52	+0.8
1,102,281	-		PP_0961	0.56	-0.3
1,102,356	+		PP_0961	0.68	+0.3
1,102,356	+		PP_0961	0.68	-0.6
1,102,356	+		PP_0961	0.68	-0.4
1,102,357	-		PP_0961	0.68	+0.4
1,102,394	+		PP_0961	0.74	-0.1
1,102,395	-		PP_0961	0.74	-0.4