Strain Fitness in Pseudomonas putida KT2440 around PP_0332

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0330 and PP_0331 are separated by 20 nucleotidesPP_0331 and PP_0332 are separated by 211 nucleotidesPP_0332 and PP_0333 are separated by 181 nucleotidesPP_0333 and PP_0334 are separated by 149 nucleotides PP_0330: PP_0330 - hypothetical protein, at 397,139 to 397,714 _0330 PP_0331: PP_0331 - conserved protein of unknown function, at 397,735 to 398,484 _0331 PP_0332: PP_0332 - putative Acyltransferase, at 398,696 to 399,583 _0332 PP_0333: PP_0333 - conserved exported protein of unknown function, at 399,765 to 400,265 _0333 PP_0334: PP_0334 - transposase, at 400,415 to 401,473 _0334 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2 3at 397.739 kb on - strandat 397.830 kb on - strand, within PP_0331at 397.895 kb on + strand, within PP_0331at 397.896 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.939 kb on - strand, within PP_0331at 397.940 kb on + strand, within PP_0331at 398.004 kb on - strand, within PP_0331at 398.018 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.099 kb on - strand, within PP_0331at 398.208 kb on + strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.244 kb on - strand, within PP_0331at 398.256 kb on + strandat 398.256 kb on + strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.259 kb on - strand, within PP_0331at 398.321 kb on + strandat 398.321 kb on + strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.322 kb on - strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.348 kb on + strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.349 kb on - strand, within PP_0331at 398.392 kb on + strand, within PP_0331at 398.404 kb on - strand, within PP_0331at 398.429 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.438 kb on + strandat 398.439 kb on - strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.491 kb on + strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.492 kb on - strandat 398.523 kb on + strandat 398.523 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.549 kb on + strandat 398.596 kb on + strandat 398.597 kb on - strandat 398.608 kb on + strandat 398.616 kb on + strandat 398.616 kb on + strandat 398.617 kb on - strandat 398.623 kb on + strandat 398.624 kb on - strandat 398.624 kb on - strandat 398.640 kb on + strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.649 kb on + strandat 398.650 kb on - strandat 398.860 kb on + strand, within PP_0332at 398.900 kb on - strand, within PP_0332at 399.001 kb on - strand, within PP_0332at 399.007 kb on - strand, within PP_0332at 399.061 kb on - strand, within PP_0332at 399.265 kb on + strand, within PP_0332at 399.265 kb on + strand, within PP_0332at 399.266 kb on - strand, within PP_0332at 399.524 kb on + strandat 399.524 kb on + strandat 399.525 kb on - strandat 399.532 kb on + strandat 399.533 kb on - strandat 399.553 kb on + strandat 399.554 kb on - strandat 399.583 kb on + strandat 399.584 kb on - strandat 399.584 kb on - strandat 399.608 kb on - strandat 399.608 kb on - strandat 399.608 kb on - strandat 399.624 kb on + strandat 399.625 kb on - strandat 399.625 kb on - strandat 399.641 kb on + strandat 399.687 kb on + strandat 399.687 kb on + strandat 399.687 kb on + strandat 399.687 kb on + strandat 399.688 kb on - strandat 399.696 kb on + strandat 399.697 kb on - strandat 399.697 kb on - strandat 399.716 kb on + strandat 399.717 kb on - strandat 399.735 kb on - strandat 399.778 kb on + strandat 399.827 kb on + strand, within PP_0333at 399.828 kb on - strand, within PP_0333at 399.828 kb on - strand, within PP_0333at 399.828 kb on - strand, within PP_0333at 399.828 kb on - strand, within PP_0333at 399.831 kb on + strand, within PP_0333at 399.831 kb on + strand, within PP_0333at 399.841 kb on - strand, within PP_0333at 399.848 kb on + strand, within PP_0333at 399.849 kb on - strand, within PP_0333at 400.005 kb on + strand, within PP_0333at 400.005 kb on + strand, within PP_0333at 400.006 kb on - strand, within PP_0333at 400.173 kb on + strand, within PP_0333at 400.282 kb on + strandat 400.282 kb on + strandat 400.283 kb on - strandat 400.283 kb on - strandat 400.283 kb on - strandat 400.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
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397,739 - -0.2
397,830 - PP_0331 0.13 -0.8
397,895 + PP_0331 0.21 -0.8
397,896 - PP_0331 0.21 +2.6
397,939 - PP_0331 0.27 -0.1
397,939 - PP_0331 0.27 +0.5
397,940 + PP_0331 0.27 -0.0
398,004 - PP_0331 0.36 -0.7
398,018 - PP_0331 0.38 +0.1
398,099 - PP_0331 0.49 -0.8
398,099 - PP_0331 0.49 +0.5
398,208 + PP_0331 0.63 -0.3
398,244 - PP_0331 0.68 +0.8
398,244 - PP_0331 0.68 -0.2
398,256 + +0.1
398,256 + PP_0331 0.69 -0.1
398,259 - PP_0331 0.70 -0.4
398,259 - PP_0331 0.70 -0.0
398,259 - PP_0331 0.70 +0.4
398,321 + +0.2
398,321 + PP_0331 0.78 -0.2
398,322 - PP_0331 0.78 +0.0
398,322 - PP_0331 0.78 +0.4
398,348 + PP_0331 0.82 +0.1
398,348 + PP_0331 0.82 -0.1
398,348 + PP_0331 0.82 -0.2
398,348 + PP_0331 0.82 -0.2
398,348 + PP_0331 0.82 +0.9
398,348 + PP_0331 0.82 +0.2
398,348 + PP_0331 0.82 +0.3
398,349 - PP_0331 0.82 -0.3
398,349 - PP_0331 0.82 +0.2
398,349 - PP_0331 0.82 -0.7
398,349 - PP_0331 0.82 -0.1
398,349 - PP_0331 0.82 -0.2
398,392 + PP_0331 0.88 -0.2
398,404 - PP_0331 0.89 -1.0
398,429 + +0.8
398,438 + +0.3
398,438 + +0.2
398,438 + -0.5
398,439 - -0.7
398,491 + +0.8
398,491 + +0.8
398,491 + +1.2
398,492 - -0.5
398,492 - +0.7
398,492 - +0.3
398,523 + -0.4
398,523 + +1.0
398,549 + +0.4
398,549 + -0.6
398,549 + -1.8
398,596 + +2.8
398,597 - +0.8
398,608 + +0.0
398,616 + +0.1
398,616 + -0.2
398,617 - +0.4
398,623 + -0.0
398,624 - -0.3
398,624 - -0.0
398,640 + -0.6
398,641 - -0.5
398,641 - +0.2
398,641 - +0.2
398,649 + +0.2
398,650 - -0.5
398,860 + PP_0332 0.18 +0.8
398,900 - PP_0332 0.23 +0.5
399,001 - PP_0332 0.34 +0.5
399,007 - PP_0332 0.35 +0.1
399,061 - PP_0332 0.41 +1.6
399,265 + PP_0332 0.64 +0.6
399,265 + PP_0332 0.64 -0.2
399,266 - PP_0332 0.64 +0.7
399,524 + +1.5
399,524 + +0.9
399,525 - -0.5
399,532 + +1.6
399,533 - +0.1
399,553 + -0.3
399,554 - -0.8
399,583 + +1.1
399,584 - +0.6
399,584 - +0.5
399,608 - -1.4
399,608 - +0.2
399,608 - +0.2
399,624 + +1.1
399,625 - +0.7
399,625 - +0.1
399,641 + +2.9
399,687 + +1.6
399,687 + +0.3
399,687 + -0.1
399,687 + -0.1
399,688 - -0.7
399,696 + +1.5
399,697 - -0.3
399,697 - -1.2
399,716 + +0.6
399,717 - -1.1
399,735 - +1.7
399,778 + +0.1
399,827 + PP_0333 0.12 -0.3
399,828 - PP_0333 0.13 -0.6
399,828 - PP_0333 0.13 -0.5
399,828 - PP_0333 0.13 -0.2
399,828 - PP_0333 0.13 -0.4
399,831 + PP_0333 0.13 -0.0
399,831 + PP_0333 0.13 +0.2
399,841 - PP_0333 0.15 +1.3
399,848 + PP_0333 0.17 +0.6
399,849 - PP_0333 0.17 -1.0
400,005 + PP_0333 0.48 +0.6
400,005 + PP_0333 0.48 -0.9
400,006 - PP_0333 0.48 +2.9
400,173 + PP_0333 0.81 -0.8
400,282 + +0.9
400,282 + +1.1
400,283 - +0.1
400,283 - -0.7
400,283 - -0.2
400,290 - -0.2

Or see this region's nucleotide sequence