Strain Fitness in Pseudomonas putida KT2440 around PP_4683

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
5,319,979	+		PP_4681	0.59	+0.9
5,320,000	+		PP_4681	0.65	+0.2
5,320,001	-		PP_4681	0.65	-0.3
5,320,091	-				+0.1
5,320,236	-		PP_4682	0.15	-2.0
5,320,310	+		PP_4682	0.24	-0.6
5,320,310	+		PP_4682	0.24	+0.2
5,320,482	+		PP_4682	0.46	+0.3
5,320,626	+		PP_4682	0.64	-0.1
5,320,752	+				-0.9
5,320,752	+		PP_4682	0.80	+0.2
5,320,754	+		PP_4682	0.80	-1.6
5,320,755	-		PP_4682	0.80	-0.5
5,320,755	-		PP_4682	0.80	+0.5
5,320,755	-		PP_4682	0.80	+0.6
5,320,932	-				-1.0
5,320,969	+				-0.5
5,320,970	-				+0.4
5,321,027	+				-0.6
5,321,028	-				-1.4
5,321,028	-				-1.0
5,321,028	-				+0.3
5,321,078	+				-0.1
5,321,078	+				-0.9
5,321,290	-		PP_4683	0.16	-0.4
5,321,333	+		PP_4683	0.17	-1.3
5,321,349	+		PP_4683	0.18	-1.5
5,321,350	-		PP_4683	0.18	-1.4
5,321,390	+		PP_4683	0.20	+0.5
5,321,391	-		PP_4683	0.20	-1.1
5,321,391	-		PP_4683	0.20	-0.2
5,321,520	-		PP_4683	0.25	-0.8
5,321,520	-		PP_4683	0.25	-1.2
5,321,520	-		PP_4683	0.25	-1.5
5,321,520	-		PP_4683	0.25	-1.5
5,321,672	+		PP_4683	0.32	+0.3
5,321,672	+		PP_4683	0.32	-1.3
5,321,672	+		PP_4683	0.32	-2.2
5,321,673	-		PP_4683	0.32	-0.4
5,321,693	+		PP_4683	0.33	-1.6
5,321,694	-		PP_4683	0.33	-1.0
5,321,699	+		PP_4683	0.33	+0.4
5,321,699	+		PP_4683	0.33	-1.0
5,321,699	+		PP_4683	0.33	-1.7
5,321,699	+		PP_4683	0.33	+0.5
5,321,700	-		PP_4683	0.33	-0.8
5,321,700	-		PP_4683	0.33	-0.9
5,321,727	-		PP_4683	0.34	+1.0
5,321,727	-		PP_4683	0.34	-0.1
5,321,804	+		PP_4683	0.38	-1.6
5,321,804	+		PP_4683	0.38	-0.6
5,321,805	-				+2.5
5,321,805	-		PP_4683	0.38	-0.1
5,321,835	-		PP_4683	0.39	-0.3
5,321,835	-		PP_4683	0.39	-0.9
5,321,836	+		PP_4683	0.39	+0.4
5,321,836	+		PP_4683	0.39	-0.9
5,321,836	+		PP_4683	0.39	-0.4
5,321,837	-		PP_4683	0.39	-0.3
5,322,052	-		PP_4683	0.48	-2.3
5,322,067	-		PP_4683	0.49	-2.3
5,322,308	+		PP_4683	0.59	-0.1
5,322,309	-		PP_4683	0.59	-2.2
5,322,309	-		PP_4683	0.59	-1.6
5,322,312	-		PP_4683	0.60	-1.1
5,322,334	+		PP_4683	0.60	-2.0
5,322,335	-		PP_4683	0.61	-2.1
5,322,335	-		PP_4683	0.61	-0.3
5,322,335	-		PP_4683	0.61	-1.4
5,322,459	-		PP_4683	0.66	-1.6
5,322,486	-		PP_4683	0.67	-0.5
5,322,557	+		PP_4683	0.70	-0.0
5,322,558	-		PP_4683	0.70	-0.5
5,322,558	-		PP_4683	0.70	+0.4
5,322,675	-		PP_4683	0.75	+0.8
5,322,675	-		PP_4683	0.75	-1.1
5,322,675	-		PP_4683	0.75	-0.5
5,322,675	-		PP_4683	0.75	-1.9
5,322,716	+		PP_4683	0.77	-1.3
5,322,716	+		PP_4683	0.77	-0.4
5,322,716	+		PP_4683	0.77	-0.8
5,322,716	+		PP_4683	0.77	-1.1
5,322,717	-		PP_4683	0.77	-1.7
5,322,724	+		PP_4683	0.77	-0.9
5,322,770	+		PP_4683	0.79	-0.4
5,322,900	-		PP_4683	0.85	-1.0
5,322,900	-		PP_4683	0.85	-0.6
5,322,900	-		PP_4683	0.85	-0.3
5,322,934	-		PP_4683	0.86	-1.0
5,322,934	-		PP_4683	0.86	-1.2
5,322,934	-		PP_4683	0.86	-0.7
5,323,064	+				-0.3
5,323,064	+				-0.5
5,323,064	+				-1.6
5,323,065	-				+0.1
5,323,065	-				-1.4
5,323,127	+				-1.2
5,323,127	+				-0.9
5,323,128	-				+0.3
5,323,265	-				+0.1
5,323,265	-				-0.1
5,323,265	-				+1.2
5,323,265	-				+1.5
5,323,273	+				-1.5
5,323,273	+				-0.8
5,323,273	+				-0.6
5,323,273	+				-0.6
5,323,274	-				+3.0
5,323,274	-				+1.2
5,323,276	-				-0.4
5,323,276	-				+0.4
5,323,276	-				+0.6
5,323,326	+				-0.5
5,323,326	+				-0.4
5,323,381	+				+0.5
5,323,381	+				-0.3
5,323,381	+				+1.3
5,323,382	-				+0.1
5,323,382	-				+0.3
5,323,382	-				-0.7
5,323,384	+				+0.3
5,323,409	+				-0.3
5,323,410	-				-0.8
5,323,410	-				+0.5
5,323,450	+				+0.8
5,323,450	+				-0.6
5,323,451	-				-0.1
5,323,451	-				+1.8
5,323,451	-				+2.2
5,323,478	+				-0.4
5,323,484	+				+0.9
5,323,484	+				-1.7
5,323,485	-				+0.8
5,323,485	-				+0.2
5,323,598	+		PP_4684	0.15	+0.3
5,323,670	+		PP_4684	0.19	-2.6
5,323,670	+		PP_4684	0.19	+0.7
5,323,671	-		PP_4684	0.19	+1.6
5,323,671	-		PP_4684	0.19	-0.2
5,324,180	+		PP_4684	0.52	-1.5
5,324,202	-		PP_4684	0.53	+0.3
5,324,228	+		PP_4684	0.55	-0.3