Strain Fitness in Pseudomonas putida KT2440 around PP_3391

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
3,840,593	+		PP_3390	0.28	+0.9
3,840,594	-		PP_3390	0.28	-0.3
3,840,594	-		PP_3390	0.28	-0.2
3,840,594	-		PP_3390	0.28	+1.2
3,840,597	+		PP_3390	0.28	-0.9
3,840,597	+		PP_3390	0.28	+0.1
3,840,597	+		PP_3390	0.28	-0.5
3,840,598	-		PP_3390	0.28	+0.8
3,840,614	+		PP_3390	0.29	-1.0
3,840,614	+		PP_3390	0.29	+0.6
3,840,614	+		PP_3390	0.29	-0.2
3,840,614	+		PP_3390	0.29	+0.1
3,840,614	+		PP_3390	0.29	+0.9
3,840,615	-		PP_3390	0.29	+0.4
3,840,620	+		PP_3390	0.30	+0.6
3,840,621	-		PP_3390	0.30	-1.0
3,840,621	-		PP_3390	0.30	+0.6
3,840,621	-		PP_3390	0.30	-2.4
3,840,621	-		PP_3390	0.30	-1.0
3,840,621	-		PP_3390	0.30	-0.5
3,840,647	+		PP_3390	0.32	-0.0
3,840,900	-		PP_3390	0.52	+0.8
3,840,900	-		PP_3390	0.52	+0.1
3,840,932	+		PP_3390	0.54	-0.2
3,840,933	-		PP_3390	0.54	-3.1
3,840,933	-		PP_3390	0.54	-0.7
3,840,968	+		PP_3390	0.57	+1.1
3,840,969	-		PP_3390	0.57	-0.0
3,841,020	+		PP_3390	0.61	+0.4
3,841,168	+		PP_3390	0.73	+0.8
3,841,169	-		PP_3390	0.73	-0.2
3,841,169	-		PP_3390	0.73	-0.3
3,841,181	+		PP_3390	0.74	+1.1
3,841,234	-		PP_3390	0.78	+0.1
3,841,440	+				-0.1
3,841,441	-				-0.3
3,841,522	+				-0.9
3,841,523	-				+0.8
3,841,535	+				+0.8
3,841,536	-				-1.3
3,841,590	+				-0.3
3,841,590	+				-0.2
3,841,590	+				-0.3
3,841,591	-				+0.5
3,841,591	-				-0.4
3,841,650	+				-1.2
3,841,650	+				-0.6
3,841,651	-				-0.6
3,841,651	-				-1.0
3,841,651	-				+0.4
3,841,651	-				-0.1
3,841,654	+				-0.7
3,841,654	+				+0.6
3,841,655	-				+0.8
3,841,655	-				-0.1
3,841,804	+		PP_3391	0.18	+0.2
3,841,909	-		PP_3391	0.26	-0.6
3,842,065	+		PP_3391	0.38	+0.3
3,842,094	+		PP_3391	0.40	+1.5
3,842,094	+		PP_3391	0.40	-0.1
3,842,094	+		PP_3391	0.40	-1.0
3,842,094	+		PP_3391	0.40	+1.5
3,842,095	-		PP_3391	0.40	-1.9
3,842,097	+		PP_3391	0.40	-0.7
3,842,098	-		PP_3391	0.40	+0.9
3,842,098	-		PP_3391	0.40	-0.4
3,842,098	-		PP_3391	0.40	+0.6
3,842,102	-		PP_3391	0.41	+0.5
3,842,102	-		PP_3391	0.41	+0.9
3,842,102	-		PP_3391	0.41	-0.7
3,842,334	-		PP_3391	0.58	+1.7
3,842,516	+		PP_3391	0.72	+2.2
3,842,532	+		PP_3391	0.73	-0.9
3,842,532	+		PP_3391	0.73	+0.1
3,842,533	-		PP_3391	0.73	+0.3
3,842,540	-		PP_3391	0.74	+0.2
3,842,541	+		PP_3391	0.74	+0.2
3,842,542	-		PP_3391	0.74	+0.5
3,842,549	+		PP_3391	0.74	+1.5
3,842,549	+		PP_3391	0.74	-0.1
3,842,656	-		PP_3391	0.83	+0.8
3,842,656	-		PP_3391	0.83	+0.3
3,842,688	+		PP_3391	0.85	+1.0
3,842,761	-				+0.0
3,842,782	+				+0.4
3,842,783	-				-1.2
3,842,818	-				-0.0
3,842,819	+				-0.3
3,842,819	+				+0.5
3,842,819	+				-0.7
3,842,820	-				-0.8
3,842,820	-				-0.2
3,842,907	+				-2.5
3,842,907	+				-0.1
3,842,960	+				+0.5
3,842,961	-				+0.0
3,843,001	+				-0.5
3,843,002	-				-0.4
3,843,002	-				+0.2
3,843,032	+		PP_3392	0.15	-2.1
3,843,058	-		PP_3392	0.20	-1.1
3,843,460	+				-0.3
3,843,461	-				+0.4
3,843,461	-				+0.9
3,843,466	+				-1.8
3,843,467	-				-0.1
3,843,467	-				-0.8
3,843,467	-				-0.9
3,843,648	+		PP_3393	0.13	-0.3
3,843,709	-		PP_3393	0.18	-1.7
3,843,709	-		PP_3393	0.18	-1.3
3,843,709	-		PP_3393	0.18	-1.0
3,843,873	-		PP_3393	0.32	+0.6