Strain Fitness in Pseudomonas putida KT2440 around PP_0903

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.001 mg/ml
1,042,714	+		PP_0902	0.40	-0.9
1,042,791	-		PP_0902	0.46	-2.4
1,042,883	+		PP_0902	0.53	+1.8
1,042,883	+		PP_0902	0.53	-2.4
1,042,935	-		PP_0902	0.57	-1.6
1,043,154	+		PP_0902	0.73	-1.9
1,043,155	-		PP_0902	0.74	+0.3
1,043,155	-		PP_0902	0.74	-0.8
1,043,226	+		PP_0902	0.79	-0.9
1,043,226	+		PP_0902	0.79	-1.3
1,043,226	+		PP_0902	0.79	-1.0
1,043,228	+		PP_0902	0.79	-1.0
1,043,229	-		PP_0902	0.79	-0.7
1,043,264	-		PP_0902	0.82	-1.2
1,043,264	-		PP_0902	0.82	+0.2
1,043,500	-				+0.5
1,043,509	+				-0.1
1,043,576	+				+2.9
1,043,576	+				+4.0
1,043,577	-				+3.0
1,043,577	-				+2.0
1,043,577	-				+4.3
1,043,577	-				+3.9
1,043,614	+				+2.6
1,043,646	-				+4.3
1,043,646	-				+4.0
1,043,670	-				+4.5
1,043,773	-				+3.7
1,043,773	-		PP_0903	0.24	+4.5
1,043,972	-		PP_0903	0.53	+5.3
1,043,972	-		PP_0903	0.53	+4.7
1,044,058	+		PP_0903	0.66	+4.1
1,044,155	+		PP_0903	0.80	+2.8
1,044,156	-		PP_0903	0.80	+5.6
1,044,175	-		PP_0903	0.83	+3.9
1,044,251	+				+3.2
1,044,269	+				+3.6
1,044,269	+				+3.5
1,044,269	+				+3.4
1,044,269	+				+3.1
1,044,269	+				+2.9
1,044,270	-				+3.7
1,044,273	+				+3.8
1,044,273	+				+4.2
1,044,273	+				+4.8
1,044,273	+				+3.4
1,044,274	-				+4.8
1,044,274	-				+5.7
1,044,274	-				+5.3
1,044,274	-				+5.5
1,044,274	-				+5.1
1,044,274	-				+5.6
1,044,274	-				+5.2
1,044,281	-				+5.0
1,044,288	-				+1.8
1,044,303	+				+2.4
1,044,304	-				+2.3
1,044,371	-		PP_0904	0.11	+2.0
1,044,435	-		PP_0904	0.20	+0.2
1,044,457	+		PP_0904	0.23	+1.1
1,044,457	+		PP_0904	0.23	+0.3
1,044,457	+		PP_0904	0.23	+1.9
1,044,461	+		PP_0904	0.24	+0.9
1,044,461	+		PP_0904	0.24	-1.4
1,044,461	+		PP_0904	0.24	+2.5
1,044,462	-		PP_0904	0.24	+2.1
1,044,462	-		PP_0904	0.24	+3.4
1,044,462	-		PP_0904	0.24	+2.4
1,044,767	+		PP_0904	0.68	+1.4
1,044,768	-		PP_0904	0.68	+1.8
1,044,768	-		PP_0904	0.68	+2.3
1,044,780	+		PP_0904	0.69	+2.0
1,044,780	+		PP_0904	0.69	+0.3
1,044,781	-		PP_0904	0.70	-0.1
1,044,781	-		PP_0904	0.70	+0.7
1,044,781	-		PP_0904	0.70	+1.3
1,044,792	+		PP_0904	0.71	-0.3
1,044,793	-		PP_0904	0.71	+0.1
1,044,793	-		PP_0904	0.71	+0.9
1,044,900	+		PP_0904	0.86	+2.2
1,044,901	-		PP_0904	0.87	-1.6
1,044,901	-		PP_0904	0.87	+1.9
1,044,993	-				-0.5
1,045,028	+		PP_0905	0.15	+0.6
1,045,029	-		PP_0905	0.15	+0.5
1,045,237	+				-0.2
1,045,237	+				-0.0