Strain Fitness in Pseudomonas putida KT2440 around PP_0026

Experiment: R2A with Polymyxin B sulfate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0024 and PP_0025 are separated by 442 nucleotidesPP_0025 and PP_0026 are separated by 288 nucleotidesPP_0026 and PP_0027 are separated by 67 nucleotidesPP_0027 and PP_0028 are separated by 32 nucleotides PP_0024: PP_0024 - putative membrane-associated metal-dependent hydrolase, at 27,850 to 29,547 _0024 PP_0025: PP_0025 - hypothetical protein, at 29,990 to 30,142 _0025 PP_0026: PP_0026 - putative cobalt/cadmium/zinc exporter, at 30,431 to 31,336 _0026 PP_0027: PP_0027 - conserved membrane protein of unknown function, at 31,404 to 31,844 _0027 PP_0028: PP_0028 - conserved hypothetical protein, at 31,877 to 32,203 _0028 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 29.453 kb on - strandat 29.569 kb on + strandat 29.582 kb on - strandat 29.586 kb on - strandat 29.586 kb on - strandat 29.586 kb on - strandat 29.593 kb on + strandat 29.603 kb on + strandat 29.604 kb on - strandat 29.689 kb on + strandat 29.689 kb on + strandat 29.692 kb on + strandat 29.692 kb on + strandat 29.693 kb on - strandat 29.711 kb on + strandat 29.854 kb on + strandat 29.855 kb on - strandat 29.857 kb on + strandat 29.891 kb on - strandat 30.009 kb on - strand, within PP_0025at 30.131 kb on + strandat 30.132 kb on - strandat 30.170 kb on - strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.180 kb on - strandat 30.180 kb on - strandat 30.374 kb on + strandat 30.374 kb on + strandat 30.374 kb on + strandat 30.375 kb on - strandat 30.375 kb on - strandat 30.375 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.385 kb on - strandat 30.385 kb on - strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.465 kb on + strandat 30.490 kb on - strandat 30.490 kb on - strandat 30.599 kb on - strand, within PP_0026at 30.599 kb on - strand, within PP_0026at 30.659 kb on - strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.834 kb on + strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.933 kb on + strand, within PP_0026at 30.934 kb on - strandat 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.120 kb on - strand, within PP_0026at 31.120 kb on - strand, within PP_0026at 31.174 kb on + strand, within PP_0026at 31.174 kb on + strand, within PP_0026at 31.175 kb on - strand, within PP_0026at 31.195 kb on - strand, within PP_0026at 31.195 kb on - strand, within PP_0026at 31.515 kb on + strand, within PP_0027at 31.515 kb on + strand, within PP_0027at 31.515 kb on + strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.516 kb on - strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.519 kb on + strand, within PP_0027at 31.520 kb on - strand, within PP_0027at 31.534 kb on + strand, within PP_0027at 31.535 kb on - strand, within PP_0027at 31.633 kb on - strand, within PP_0027at 31.636 kb on + strand, within PP_0027at 31.677 kb on + strand, within PP_0027at 31.677 kb on + strand, within PP_0027at 31.678 kb on - strand, within PP_0027at 31.678 kb on - strand, within PP_0027at 31.689 kb on + strand, within PP_0027at 31.690 kb on - strand, within PP_0027at 31.715 kb on + strand, within PP_0027at 31.716 kb on - strand, within PP_0027at 31.716 kb on - strand, within PP_0027at 31.735 kb on + strand, within PP_0027at 31.735 kb on + strand, within PP_0027at 31.736 kb on - strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.739 kb on + strand, within PP_0027at 31.740 kb on - strand, within PP_0027at 31.740 kb on - strand, within PP_0027at 31.810 kb on + strandat 31.810 kb on + strandat 31.811 kb on - strandat 31.840 kb on + strandat 31.840 kb on + strandat 31.841 kb on - strandat 31.886 kb on - strandat 31.888 kb on + strandat 31.889 kb on - strandat 31.889 kb on - strandat 31.947 kb on + strand, within PP_0028at 31.964 kb on + strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.965 kb on - strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.994 kb on + strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.995 kb on - strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.998 kb on + strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 31.999 kb on - strand, within PP_0028at 32.009 kb on - strand, within PP_0028at 32.038 kb on - strand, within PP_0028at 32.079 kb on + strand, within PP_0028at 32.098 kb on + strand, within PP_0028at 32.099 kb on - strand, within PP_0028at 32.104 kb on + strand, within PP_0028at 32.105 kb on - strand, within PP_0028at 32.119 kb on + strand, within PP_0028at 32.119 kb on + strandat 32.190 kb on - strandat 32.204 kb on - strandat 32.204 kb on - strandat 32.255 kb on - strandat 32.268 kb on - strandat 32.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.001 mg/ml
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29,453 - -1.6
29,569 + -0.7
29,582 - +10.6
29,586 - +9.6
29,586 - +8.9
29,586 - +9.1
29,593 + +0.0
29,603 + -2.0
29,604 - +9.8
29,689 + +0.3
29,689 + +0.7
29,692 + +0.5
29,692 + +0.5
29,693 - +10.0
29,711 + +0.3
29,854 + -1.0
29,855 - +4.0
29,857 + -0.1
29,891 - +3.3
30,009 - PP_0025 0.12 +1.9
30,131 + +0.2
30,132 - -0.5
30,170 - +1.1
30,179 + -0.8
30,179 + -0.6
30,179 + -0.1
30,179 + +0.5
30,179 + +0.4
30,180 - +1.8
30,180 - +1.6
30,374 + -0.0
30,374 + -1.0
30,374 + +1.1
30,375 - +1.6
30,375 - +0.4
30,375 - +0.5
30,381 - +1.8
30,381 - +0.3
30,381 - +1.3
30,381 - +0.3
30,384 + -0.4
30,384 + +0.2
30,384 + -1.7
30,384 + -0.5
30,385 - -0.3
30,385 - +0.5
30,428 + -0.7
30,428 + -0.2
30,428 + +0.5
30,428 + -0.5
30,428 + +2.0
30,428 + -0.4
30,429 - +0.2
30,429 - +0.6
30,429 - +0.5
30,429 - +1.0
30,429 - -0.3
30,465 + -1.1
30,490 - -2.8
30,490 - -0.7
30,599 - PP_0026 0.19 +0.6
30,599 - PP_0026 0.19 -0.2
30,659 - PP_0026 0.25 -0.5
30,737 + PP_0026 0.34 +0.9
30,737 + PP_0026 0.34 +1.0
30,737 + PP_0026 0.34 +0.8
30,737 + PP_0026 0.34 +0.5
30,738 - PP_0026 0.34 +0.3
30,738 - PP_0026 0.34 -0.1
30,738 - PP_0026 0.34 +0.3
30,738 - PP_0026 0.34 +0.1
30,738 - PP_0026 0.34 -1.4
30,738 - PP_0026 0.34 +1.4
30,738 - PP_0026 0.34 -0.4
30,746 + PP_0026 0.35 -0.7
30,746 + PP_0026 0.35 +0.4
30,746 + PP_0026 0.35 -0.4
30,746 + PP_0026 0.35 -0.0
30,747 - PP_0026 0.35 +0.2
30,747 - PP_0026 0.35 -0.7
30,747 - PP_0026 0.35 -0.4
30,747 - PP_0026 0.35 +0.1
30,747 - PP_0026 0.35 +0.7
30,747 - PP_0026 0.35 +0.8
30,747 - PP_0026 0.35 -0.4
30,747 - PP_0026 0.35 +0.4
30,747 - PP_0026 0.35 +1.1
30,834 + PP_0026 0.44 +0.5
30,835 - PP_0026 0.45 +0.2
30,835 - PP_0026 0.45 +0.9
30,893 + PP_0026 0.51 +0.2
30,893 + PP_0026 0.51 +0.5
30,894 - PP_0026 0.51 +0.3
30,894 - PP_0026 0.51 +0.5
30,933 + PP_0026 0.55 -1.5
30,934 - +2.3
30,949 + PP_0026 0.57 -0.7
30,949 + PP_0026 0.57 -0.3
30,949 + PP_0026 0.57 +0.8
30,949 + PP_0026 0.57 -1.4
30,950 - PP_0026 0.57 +2.2
30,950 - PP_0026 0.57 +0.0
30,950 - PP_0026 0.57 +0.4
30,950 - PP_0026 0.57 -0.7
30,950 - PP_0026 0.57 +0.1
30,950 - PP_0026 0.57 +0.2
30,950 - PP_0026 0.57 -0.5
30,950 - PP_0026 0.57 -0.8
31,119 + PP_0026 0.76 +0.4
31,119 + PP_0026 0.76 +0.3
31,120 - PP_0026 0.76 +0.3
31,120 - PP_0026 0.76 -1.8
31,174 + PP_0026 0.82 +1.7
31,174 + PP_0026 0.82 -0.4
31,175 - PP_0026 0.82 -0.8
31,195 - PP_0026 0.84 -0.2
31,195 - PP_0026 0.84 +0.4
31,515 + PP_0027 0.25 +1.8
31,515 + PP_0027 0.25 -0.4
31,515 + PP_0027 0.25 -0.0
31,516 - PP_0027 0.25 -0.3
31,516 - PP_0027 0.25 -1.8
31,516 - PP_0027 0.25 -1.2
31,516 - PP_0027 0.25 -0.0
31,519 + PP_0027 0.26 -0.6
31,519 + PP_0027 0.26 +0.5
31,519 + PP_0027 0.26 +0.4
31,519 + PP_0027 0.26 +0.1
31,520 - PP_0027 0.26 +0.2
31,534 + PP_0027 0.29 +0.9
31,535 - PP_0027 0.30 -1.8
31,633 - PP_0027 0.52 +0.3
31,636 + PP_0027 0.53 -0.5
31,677 + PP_0027 0.62 +0.4
31,677 + PP_0027 0.62 -0.2
31,678 - PP_0027 0.62 +1.1
31,678 - PP_0027 0.62 +0.5
31,689 + PP_0027 0.65 +0.8
31,690 - PP_0027 0.65 -0.2
31,715 + PP_0027 0.71 +1.2
31,716 - PP_0027 0.71 +0.4
31,716 - PP_0027 0.71 -0.3
31,735 + PP_0027 0.75 +0.9
31,735 + PP_0027 0.75 -0.4
31,736 - PP_0027 0.75 -1.2
31,739 + PP_0027 0.76 -1.7
31,739 + PP_0027 0.76 +0.7
31,739 + PP_0027 0.76 +0.5
31,740 - PP_0027 0.76 +0.1
31,740 - PP_0027 0.76 -0.3
31,810 + -0.2
31,810 + -0.3
31,811 - +0.7
31,840 + +0.8
31,840 + +0.6
31,841 - +0.6
31,886 - -1.9
31,888 + -0.3
31,889 - -0.5
31,889 - +0.7
31,947 + PP_0028 0.21 -1.8
31,964 + PP_0028 0.27 -0.0
31,965 - PP_0028 0.27 -1.1
31,965 - PP_0028 0.27 +0.4
31,965 - PP_0028 0.27 -0.4
31,965 - PP_0028 0.27 -0.1
31,994 + PP_0028 0.36 +0.9
31,994 + PP_0028 0.36 -0.1
31,994 + PP_0028 0.36 +0.2
31,995 - PP_0028 0.36 +0.1
31,995 - PP_0028 0.36 -0.4
31,995 - PP_0028 0.36 +0.3
31,998 + PP_0028 0.37 +0.0
31,998 + PP_0028 0.37 -0.5
31,998 + PP_0028 0.37 -0.8
31,998 + PP_0028 0.37 +0.6
31,998 + PP_0028 0.37 -0.0
31,998 + PP_0028 0.37 +0.2
31,999 - PP_0028 0.37 -1.3
31,999 - PP_0028 0.37 +0.1
31,999 - PP_0028 0.37 +1.0
32,009 - PP_0028 0.40 -2.3
32,038 - PP_0028 0.49 +0.4
32,079 + PP_0028 0.62 -0.9
32,098 + PP_0028 0.68 +0.3
32,099 - PP_0028 0.68 +1.0
32,104 + PP_0028 0.69 -0.3
32,105 - PP_0028 0.70 +0.6
32,119 + PP_0028 0.74 +0.1
32,119 + -0.3
32,190 - +0.1
32,204 - -1.1
32,204 - -0.2
32,255 - -0.7
32,268 - +0.8
32,268 - -0.5

Or see this region's nucleotide sequence