Experiment: M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpA and serW are separated by 343 nucleotides serW and infA are separated by 253 nucleotides infA and aat are separated by 284 nucleotides
b0882: clpA - ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI), at 922,487 to 924,763
clpA
b0883: serW - tRNA-Ser (NCBI), at 925,107 to 925,194
serW
b0884: infA - translation initiation factor IF-1 (NCBI), at 925,448 to 925,666
infA
b0885: aat - leucyl/phenylalanyl-tRNA--protein transferase (NCBI), at 925,951 to 926,655
aat
Position (kb) 925
926 Strain fitness (log2 ratio) -1
0
1 at 924.151 kb on - strand, within clpA at 924.151 kb on - strand, within clpA at 924.151 kb on - strand, within clpA at 924.344 kb on + strand, within clpA at 924.344 kb on + strand, within clpA at 924.542 kb on + strand at 924.566 kb on + strand at 924.616 kb on - strand at 924.616 kb on - strand at 924.644 kb on + strand at 924.644 kb on + strand at 924.734 kb on + strand at 924.734 kb on + strand at 924.765 kb on - strand at 924.780 kb on + strand at 924.954 kb on + strand at 925.246 kb on - strand at 925.246 kb on - strand at 925.319 kb on + strand at 925.319 kb on + strand at 925.319 kb on + strand at 925.327 kb on - strand at 925.686 kb on - strand at 925.687 kb on - strand at 925.687 kb on - strand at 925.779 kb on - strand at 925.885 kb on + strand at 925.967 kb on + strand at 925.967 kb on + strand at 926.089 kb on + strand, within aat
Per-strain Table
Position Strand Gene LocusTag Fraction M9 remove 924,151 - clpA b0882 0.73 +0.3 924,151 - clpA b0882 0.73 -0.0 924,151 - clpA b0882 0.73 -0.7 924,344 + clpA b0882 0.82 +0.2 924,344 + clpA b0882 0.82 +0.0 924,542 + +0.1 924,566 + -0.7 924,616 - +1.2 924,616 - +0.4 924,644 + +0.4 924,644 + +0.3 924,734 + -0.2 924,734 + -0.4 924,765 - +0.2 924,780 + +0.4 924,954 + +1.1 925,246 - +0.3 925,246 - -1.6 925,319 + -0.0 925,319 + -0.8 925,319 + -0.3 925,327 - +0.1 925,686 - -0.5 925,687 - -0.5 925,687 - -0.0 925,779 - -0.2 925,885 + +0.3 925,967 + +0.5 925,967 + -0.9 926,089 + aat b0885 0.20 -0.4
Or see this region's nucleotide sequence