Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4796 and PP_4797 are separated by 216 nucleotides PP_4797 and PP_4798 are separated by 60 nucleotides PP_4798 and PP_4799 are separated by 33 nucleotides
PP_4796: PP_4796 - DNA polymerase III, delta subunit, at 5,459,582 to 5,460,619
_4796
PP_4797: PP_4797 - conserved protein of unknown function, at 5,460,836 to 5,461,000
_4797
PP_4798: PP_4798 - putative Membrane-bound lytic murein transglycosylase, at 5,461,061 to 5,462,377
_4798
PP_4799: PP_4799 - putative Muramoyltetrapeptide carboxypeptidase, at 5,462,411 to 5,463,349
_4799
Position (kb) 5461
5462
5463 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5460.633 kb on - strand at 5460.710 kb on + strand at 5460.732 kb on + strand at 5460.738 kb on + strand at 5460.738 kb on + strand at 5460.760 kb on - strand at 5460.760 kb on - strand at 5460.761 kb on + strand at 5460.761 kb on + strand at 5460.761 kb on + strand at 5460.761 kb on + strand at 5460.761 kb on + strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.762 kb on - strand at 5460.797 kb on - strand at 5460.942 kb on - strand, within PP_4797 at 5460.983 kb on + strand, within PP_4797 at 5460.984 kb on - strand at 5461.024 kb on + strand at 5461.024 kb on + strand at 5461.024 kb on + strand at 5461.024 kb on + strand at 5461.025 kb on - strand at 5461.025 kb on - strand at 5461.025 kb on - strand at 5461.025 kb on - strand at 5461.025 kb on - strand at 5461.409 kb on + strand, within PP_4798 at 5461.410 kb on - strand, within PP_4798 at 5461.503 kb on - strand, within PP_4798 at 5461.748 kb on + strand, within PP_4798 at 5461.748 kb on + strand, within PP_4798 at 5461.749 kb on - strand, within PP_4798 at 5461.835 kb on + strand, within PP_4798 at 5461.835 kb on + strand, within PP_4798 at 5461.835 kb on + strand, within PP_4798 at 5461.836 kb on - strand, within PP_4798 at 5461.885 kb on - strand, within PP_4798 at 5461.885 kb on - strand, within PP_4798 at 5461.885 kb on - strand, within PP_4798 at 5461.999 kb on + strand, within PP_4798 at 5462.091 kb on - strand, within PP_4798 at 5462.091 kb on - strand, within PP_4798 at 5462.108 kb on + strand, within PP_4798 at 5462.108 kb on + strand, within PP_4798 at 5462.109 kb on - strand, within PP_4798 at 5462.109 kb on - strand, within PP_4798 at 5462.255 kb on - strand at 5462.281 kb on + strand at 5462.375 kb on + strand at 5462.376 kb on - strand at 5462.376 kb on - strand at 5462.492 kb on + strand at 5462.492 kb on + strand at 5462.493 kb on - strand at 5462.493 kb on - strand at 5462.493 kb on - strand at 5462.558 kb on - strand, within PP_4799 at 5462.558 kb on - strand, within PP_4799 at 5462.558 kb on - strand, within PP_4799 at 5462.590 kb on + strand, within PP_4799 at 5462.591 kb on - strand, within PP_4799 at 5462.973 kb on + strand, within PP_4799 at 5462.983 kb on + strand, within PP_4799 at 5462.984 kb on - strand, within PP_4799 at 5463.202 kb on + strand, within PP_4799 at 5463.202 kb on + strand, within PP_4799
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 5,460,633 - -0.8 5,460,710 + +0.8 5,460,732 + -1.0 5,460,738 + +0.4 5,460,738 + -0.8 5,460,760 - -0.6 5,460,760 - -0.1 5,460,761 + +0.4 5,460,761 + +0.4 5,460,761 + +1.2 5,460,761 + +0.2 5,460,761 + -1.2 5,460,762 - -0.0 5,460,762 - +0.6 5,460,762 - +0.6 5,460,762 - +0.9 5,460,762 - +0.1 5,460,762 - +0.2 5,460,762 - -0.1 5,460,797 - -0.4 5,460,942 - PP_4797 0.64 -2.3 5,460,983 + PP_4797 0.89 +0.5 5,460,984 - -1.0 5,461,024 + +0.1 5,461,024 + +0.1 5,461,024 + -0.2 5,461,024 + +1.1 5,461,025 - +1.1 5,461,025 - +0.6 5,461,025 - +0.5 5,461,025 - +0.3 5,461,025 - -0.6 5,461,409 + PP_4798 0.26 -0.8 5,461,410 - PP_4798 0.26 -0.5 5,461,503 - PP_4798 0.34 -1.8 5,461,748 + PP_4798 0.52 -0.4 5,461,748 + PP_4798 0.52 +0.0 5,461,749 - PP_4798 0.52 -1.6 5,461,835 + PP_4798 0.59 -0.0 5,461,835 + PP_4798 0.59 -0.7 5,461,835 + PP_4798 0.59 -1.4 5,461,836 - PP_4798 0.59 -0.1 5,461,885 - PP_4798 0.63 +1.0 5,461,885 - PP_4798 0.63 +0.5 5,461,885 - PP_4798 0.63 -0.9 5,461,999 + PP_4798 0.71 -0.6 5,462,091 - PP_4798 0.78 -0.2 5,462,091 - PP_4798 0.78 +1.5 5,462,108 + PP_4798 0.79 -1.5 5,462,108 + PP_4798 0.79 +0.5 5,462,109 - PP_4798 0.80 -1.2 5,462,109 - PP_4798 0.80 -3.2 5,462,255 - -0.3 5,462,281 + +0.1 5,462,375 + +0.5 5,462,376 - -0.3 5,462,376 - -1.3 5,462,492 + -2.2 5,462,492 + -3.1 5,462,493 - -1.0 5,462,493 - -0.3 5,462,493 - -3.1 5,462,558 - PP_4799 0.16 -2.3 5,462,558 - PP_4799 0.16 -2.5 5,462,558 - PP_4799 0.16 -1.5 5,462,590 + PP_4799 0.19 -1.5 5,462,591 - PP_4799 0.19 -2.2 5,462,973 + PP_4799 0.60 -2.6 5,462,983 + PP_4799 0.61 -2.1 5,462,984 - PP_4799 0.61 -1.5 5,463,202 + PP_4799 0.84 -1.7 5,463,202 + PP_4799 0.84 -3.4
Or see this region's nucleotide sequence