Strain Fitness in Escherichia coli BW25113 around b1877
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,959,835 | + | -0.2 | |||
1,959,850 | + | -0.4 | |||
1,959,850 | + | -2.0 | |||
1,959,881 | + | -0.1 | |||
1,959,887 | - | +0.0 | |||
1,959,907 | + | -1.0 | |||
1,959,932 | - | +1.8 | |||
1,959,960 | + | +0.9 | |||
1,959,979 | + | -0.2 | |||
1,960,031 | + | +1.2 | |||
1,960,035 | + | +1.8 | |||
1,960,035 | + | +1.8 | |||
1,960,040 | + | +0.2 | |||
1,960,040 | + | +1.8 | |||
1,960,065 | + | yecT | b1877 | 0.14 | +1.8 |
1,960,067 | - | yecT | b1877 | 0.15 | +2.4 |
1,960,079 | - | yecT | b1877 | 0.17 | -1.3 |
1,960,079 | - | yecT | b1877 | 0.17 | -1.5 |
1,960,120 | + | yecT | b1877 | 0.25 | +1.8 |
1,960,129 | + | yecT | b1877 | 0.27 | +0.2 |
1,960,144 | + | yecT | b1877 | 0.30 | +0.2 |
1,960,274 | - | yecT | b1877 | 0.57 | +0.5 |
1,960,274 | - | yecT | b1877 | 0.57 | +0.2 |
1,960,357 | + | yecT | b1877 | 0.74 | -0.2 |
1,960,358 | + | yecT | b1877 | 0.74 | +0.8 |
1,960,372 | - | yecT | b1877 | 0.77 | -1.9 |
1,960,390 | + | yecT | b1877 | 0.81 | +1.8 |
1,960,390 | + | yecT | b1877 | 0.81 | +0.8 |
1,960,391 | + | yecT | b1877 | 0.81 | +1.8 |
1,960,431 | + | yecT | b1877 | 0.89 | +0.8 |
1,960,431 | + | yecT | b1877 | 0.89 | +1.8 |
1,960,439 | + | -0.5 | |||
1,960,511 | - | +1.2 | |||
1,960,511 | - | -0.2 | |||
1,960,560 | - | +0.6 | |||
1,960,646 | - | flhE | b1878 | 0.11 | +0.8 |
1,960,680 | - | flhE | b1878 | 0.19 | +0.4 |
1,960,723 | - | flhE | b1878 | 0.30 | -0.5 |
1,960,723 | - | flhE | b1878 | 0.30 | -0.1 |
1,960,813 | + | flhE | b1878 | 0.53 | -1.0 |
1,960,844 | - | flhE | b1878 | 0.61 | -0.2 |
1,960,846 | - | flhE | b1878 | 0.62 | -0.6 |
1,960,846 | - | flhE | b1878 | 0.62 | -1.1 |
1,960,882 | + | flhE | b1878 | 0.71 | -0.2 |
1,960,882 | + | flhE | b1878 | 0.71 | -1.0 |
1,960,988 | - | +0.9 | |||
1,961,060 | - | -0.0 | |||
1,961,060 | - | +1.0 | |||
1,961,071 | - | +0.2 | |||
1,961,144 | + | -1.6 | |||
1,961,162 | - | -0.1 | |||
1,961,264 | + | flhA | b1879 | 0.13 | -0.5 |
1,961,329 | - | flhA | b1879 | 0.16 | -0.4 |
1,961,415 | - | flhA | b1879 | 0.20 | +0.7 |
1,961,422 | + | flhA | b1879 | 0.20 | +0.1 |
1,961,456 | + | flhA | b1879 | 0.22 | +0.5 |
Or see this region's nucleotide sequence