Strain Fitness in Escherichia coli BW25113 around b2396
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,515,150 | + | yfeA | b2395 | 0.68 | +0.1 |
2,515,165 | - | yfeA | b2395 | 0.68 | -0.2 |
2,515,165 | - | yfeA | b2395 | 0.68 | +0.7 |
2,515,199 | - | yfeA | b2395 | 0.70 | -0.3 |
2,515,236 | - | yfeA | b2395 | 0.72 | -0.5 |
2,515,301 | - | yfeA | b2395 | 0.75 | -1.3 |
2,515,561 | + | yfeA | b2395 | 0.87 | -0.3 |
2,515,744 | + | +1.6 | |||
2,515,857 | + | +1.2 | |||
2,515,859 | + | -1.4 | |||
2,515,859 | + | +1.6 | |||
2,515,867 | - | +0.8 | |||
2,515,977 | - | +0.4 | |||
2,515,986 | - | -0.2 | |||
2,516,197 | - | alaW | b2397 | 0.25 | -1.0 |
2,516,434 | - | -0.2 | |||
2,516,439 | + | -0.2 | |||
2,516,439 | + | +0.3 | |||
2,516,560 | - | yfeC | b2398 | 0.21 | +1.7 |
2,516,560 | - | yfeC | b2398 | 0.21 | +2.7 |
2,516,568 | - | yfeC | b2398 | 0.23 | +1.8 |
2,516,620 | - | yfeC | b2398 | 0.38 | +0.5 |
2,516,787 | + | yfeC | b2398 | 0.86 | -0.4 |
2,516,808 | + | +0.8 | |||
2,516,808 | + | +0.0 | |||
2,516,873 | + | +0.2 | |||
2,516,873 | + | -1.7 | |||
2,516,890 | - | yfeD | b2399 | 0.14 | +1.5 |
2,516,890 | - | yfeD | b2399 | 0.14 | -0.8 |
2,516,963 | - | yfeD | b2399 | 0.33 | -0.2 |
2,516,976 | - | yfeD | b2399 | 0.36 | +1.8 |
2,517,017 | - | yfeD | b2399 | 0.46 | +0.8 |
2,517,027 | + | yfeD | b2399 | 0.49 | +0.3 |
2,517,035 | - | yfeD | b2399 | 0.51 | +0.9 |
2,517,035 | - | yfeD | b2399 | 0.51 | +0.2 |
2,517,035 | - | yfeD | b2399 | 0.51 | +0.8 |
2,517,037 | - | yfeD | b2399 | 0.51 | +2.4 |
2,517,044 | + | yfeD | b2399 | 0.53 | +0.3 |
2,517,044 | + | yfeD | b2399 | 0.53 | -0.0 |
2,517,047 | + | yfeD | b2399 | 0.54 | +0.6 |
2,517,047 | + | yfeD | b2399 | 0.54 | -3.0 |
Or see this region's nucleotide sequence