Strain Fitness in Escherichia coli BW25113 around b2421
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,535,716 | - | -0.4 | |||
2,535,916 | + | yfeS | b2420 | 0.20 | +0.5 |
2,536,076 | + | yfeS | b2420 | 0.41 | +0.6 |
2,536,093 | - | yfeS | b2420 | 0.44 | -1.0 |
2,536,093 | - | yfeS | b2420 | 0.44 | +1.0 |
2,536,129 | + | yfeS | b2420 | 0.49 | -0.0 |
2,536,213 | + | yfeS | b2420 | 0.60 | -0.3 |
2,536,254 | - | yfeS | b2420 | 0.66 | +1.4 |
2,536,282 | - | yfeS | b2420 | 0.70 | +0.1 |
2,536,292 | - | yfeS | b2420 | 0.71 | -0.3 |
2,536,299 | + | yfeS | b2420 | 0.72 | -0.9 |
2,536,299 | + | yfeS | b2420 | 0.72 | -0.1 |
2,536,307 | - | yfeS | b2420 | 0.73 | +2.2 |
2,536,307 | - | yfeS | b2420 | 0.73 | -1.2 |
2,536,319 | + | yfeS | b2420 | 0.75 | -0.6 |
2,536,329 | - | yfeS | b2420 | 0.76 | -0.5 |
2,536,340 | + | yfeS | b2420 | 0.77 | -0.8 |
2,536,343 | - | yfeS | b2420 | 0.78 | +1.3 |
2,536,370 | + | yfeS | b2420 | 0.81 | +0.3 |
2,536,370 | + | yfeS | b2420 | 0.81 | +0.2 |
2,536,448 | - | -0.8 | |||
2,536,448 | - | -0.0 | |||
2,536,531 | + | -0.4 | |||
2,536,700 | - | -0.5 | |||
2,536,702 | - | -0.4 | |||
2,536,906 | + | cysM | b2421 | 0.23 | +0.3 |
2,537,014 | - | cysM | b2421 | 0.35 | +0.2 |
2,537,014 | - | cysM | b2421 | 0.35 | +1.0 |
2,537,041 | + | cysM | b2421 | 0.38 | +0.1 |
2,537,041 | + | cysM | b2421 | 0.38 | -0.2 |
2,537,148 | + | cysM | b2421 | 0.50 | -1.7 |
2,537,148 | + | cysM | b2421 | 0.50 | +0.2 |
2,537,578 | + | -0.4 | |||
2,537,578 | + | -0.4 | |||
2,537,849 | + | cysA | b2422 | 0.10 | -0.6 |
2,537,862 | - | cysA | b2422 | 0.11 | -1.1 |
2,537,903 | - | cysA | b2422 | 0.15 | -1.1 |
2,537,963 | - | cysA | b2422 | 0.20 | +0.7 |
2,538,033 | + | cysA | b2422 | 0.27 | +0.1 |
2,538,037 | - | cysA | b2422 | 0.27 | -0.5 |
2,538,054 | - | cysA | b2422 | 0.29 | +0.6 |
2,538,054 | - | cysA | b2422 | 0.29 | -1.4 |
2,538,084 | - | cysA | b2422 | 0.31 | -0.5 |
2,538,108 | - | cysA | b2422 | 0.34 | +0.7 |
2,538,114 | + | cysA | b2422 | 0.34 | -0.6 |
2,538,193 | + | cysA | b2422 | 0.41 | +0.5 |
2,538,193 | + | cysA | b2422 | 0.41 | -1.1 |
2,538,224 | + | cysA | b2422 | 0.44 | -0.5 |
2,538,224 | + | cysA | b2422 | 0.44 | -1.1 |
2,538,334 | - | cysA | b2422 | 0.54 | -0.1 |
2,538,334 | - | cysA | b2422 | 0.54 | -2.5 |
2,538,336 | - | cysA | b2422 | 0.54 | +0.3 |
Or see this region's nucleotide sequence