Strain Fitness in Escherichia coli BW25113 around b2717
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,839,607 | + | ascB | b2716 | 0.42 | +0.4 |
2,839,661 | - | ascB | b2716 | 0.46 | +0.7 |
2,839,893 | - | ascB | b2716 | 0.62 | -0.4 |
2,839,893 | - | ascB | b2716 | 0.62 | -0.1 |
2,840,238 | + | ascB | b2716 | 0.86 | +0.1 |
2,840,256 | - | ascB | b2716 | 0.87 | -0.2 |
2,840,263 | + | ascB | b2716 | 0.88 | +0.7 |
2,840,281 | - | ascB | b2716 | 0.89 | +0.2 |
2,840,497 | - | -0.2 | |||
2,840,551 | - | -0.8 | |||
2,840,558 | + | +0.0 | |||
2,840,644 | + | hycI | b2717 | 0.10 | -0.6 |
2,840,688 | - | hycI | b2717 | 0.20 | -0.5 |
2,840,699 | + | hycI | b2717 | 0.22 | -0.5 |
2,840,699 | + | hycI | b2717 | 0.22 | -1.1 |
2,840,711 | - | hycI | b2717 | 0.25 | -0.1 |
2,840,711 | - | hycI | b2717 | 0.25 | -0.4 |
2,840,731 | - | hycI | b2717 | 0.29 | -0.4 |
2,840,731 | - | hycI | b2717 | 0.29 | -0.3 |
2,841,008 | + | hycI | b2717 | 0.88 | -0.2 |
2,841,071 | + | +0.1 | |||
2,841,119 | + | hycH | b2718 | 0.15 | +0.4 |
2,841,150 | + | hycH | b2718 | 0.22 | +0.6 |
2,841,167 | + | hycH | b2718 | 0.27 | -0.3 |
2,841,175 | - | hycH | b2718 | 0.28 | +1.1 |
2,841,207 | + | hycH | b2718 | 0.36 | -0.3 |
2,841,225 | + | hycH | b2718 | 0.41 | -0.6 |
2,841,272 | - | hycH | b2718 | 0.52 | -0.3 |
2,841,300 | + | hycH | b2718 | 0.59 | -0.1 |
2,841,300 | + | hycH | b2718 | 0.59 | -0.2 |
2,841,327 | - | hycH | b2718 | 0.65 | -2.1 |
2,841,327 | - | hycH | b2718 | 0.65 | -0.2 |
2,841,338 | - | hycH | b2718 | 0.68 | -0.5 |
2,841,384 | - | hycH | b2718 | 0.79 | +1.3 |
2,841,572 | + | hycG | b2719 | 0.14 | -0.2 |
2,841,581 | - | hycG | b2719 | 0.15 | -0.4 |
2,841,622 | - | hycG | b2719 | 0.20 | +0.2 |
2,841,645 | - | hycG | b2719 | 0.23 | +0.2 |
2,841,648 | - | hycG | b2719 | 0.24 | -0.2 |
2,841,713 | + | hycG | b2719 | 0.32 | +0.1 |
2,841,774 | - | hycG | b2719 | 0.40 | +0.1 |
2,841,821 | - | hycG | b2719 | 0.46 | -0.7 |
2,841,861 | - | hycG | b2719 | 0.52 | -0.3 |
2,841,870 | - | hycG | b2719 | 0.53 | +0.4 |
2,842,019 | + | hycG | b2719 | 0.72 | +0.4 |
2,842,047 | - | hycG | b2719 | 0.76 | +0.1 |
Or see this region's nucleotide sequence