Strain Fitness in Escherichia coli BW25113 around b3405

Experiment: LB 0.1x with Mixed culture; Trichoderma virens G41

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 0.1x with Mixed culture; Trichoderma virens G41
3,532,888	-	envZ	b3404	0.26	-1.1
3,532,919	+	envZ	b3404	0.28	-1.0
3,532,970	-	envZ	b3404	0.32	-2.0
3,532,973	+	envZ	b3404	0.32	-3.7
3,533,031	-	envZ	b3404	0.36	+0.4
3,533,093	+	envZ	b3404	0.41	-0.6
3,533,139	-	envZ	b3404	0.44	-2.0
3,533,159	+	envZ	b3404	0.46	-2.7
3,533,203	+	envZ	b3404	0.49	-1.0
3,533,264	+	envZ	b3404	0.54	-1.0
3,533,306	+	envZ	b3404	0.57	-0.6
3,533,314	-	envZ	b3404	0.57	+0.3
3,533,326	-	envZ	b3404	0.58	-0.4
3,533,342	+	envZ	b3404	0.59	-3.7
3,533,350	-	envZ	b3404	0.60	-0.5
3,533,350	-	envZ	b3404	0.60	+1.5
3,533,360	-	envZ	b3404	0.61	-1.3
3,533,360	-	envZ	b3404	0.61	-0.8
3,533,398	+	envZ	b3404	0.64	-1.4
3,533,400	+	envZ	b3404	0.64	-3.1
3,533,406	-	envZ	b3404	0.64	-0.9
3,533,458	+	envZ	b3404	0.68	-1.3
3,533,460	+	envZ	b3404	0.68	-0.6
3,533,492	+	envZ	b3404	0.71	-3.1
3,533,519	+	envZ	b3404	0.73	-0.8
3,533,523	-	envZ	b3404	0.73	-2.1
3,533,571	-	envZ	b3404	0.76	-1.1
3,533,571	-	envZ	b3404	0.76	-1.9
3,533,572	-	envZ	b3404	0.76	-0.8
3,533,599	-	envZ	b3404	0.78	-1.6
3,533,629	-	envZ	b3404	0.81	-0.8
3,533,676	+	envZ	b3404	0.84	-0.7
3,533,693	+	envZ	b3404	0.85	-2.0
3,533,723	+	envZ	b3404	0.88	-1.2
3,533,832	+				-1.2
3,533,853	-				-2.9
3,533,853	-				-2.0
3,533,871	-				-1.1
3,533,892	+				-2.7
3,533,900	-				+0.7
3,533,900	-				+0.0
3,533,900	-				+2.1
3,533,900	-				-0.3
3,533,907	+				-2.9
3,533,926	+				-1.3
3,533,933	-				-1.6
3,533,950	-				-0.6
3,534,010	-	ompR	b3405	0.17	-1.0
3,534,010	-	ompR	b3405	0.17	-2.2
3,534,057	-	ompR	b3405	0.24	-0.0
3,534,093	+	ompR	b3405	0.29	-1.7
3,534,097	+	ompR	b3405	0.29	-2.9
3,534,097	+	ompR	b3405	0.29	+1.0
3,534,097	+	ompR	b3405	0.29	-3.2
3,534,105	-	ompR	b3405	0.30	-2.2
3,534,105	-	ompR	b3405	0.30	-1.6
3,534,129	-	ompR	b3405	0.34	-3.8
3,534,168	-	ompR	b3405	0.39	-3.0
3,534,206	+	ompR	b3405	0.44	-0.6
3,534,228	-	ompR	b3405	0.47	-2.9
3,534,257	-	ompR	b3405	0.51	-2.3
3,534,260	-	ompR	b3405	0.52	-1.0
3,534,267	-	ompR	b3405	0.53	-0.6
3,534,267	-	ompR	b3405	0.53	-1.3
3,534,358	-	ompR	b3405	0.65	+0.1
3,534,436	+	ompR	b3405	0.76	+1.0
3,534,447	+	ompR	b3405	0.78	+2.0
3,534,456	-	ompR	b3405	0.79	-2.5
3,534,509	+	ompR	b3405	0.86	-2.2
3,534,514	+	ompR	b3405	0.87	-2.0
3,534,514	+	ompR	b3405	0.87	-1.8
3,534,522	-	ompR	b3405	0.88	-2.9
3,534,541	-				-1.6
3,534,541	-				-1.0
3,534,544	+				-1.6
3,534,606	-				-0.9
3,534,608	+				+0.3
3,534,608	+				-1.5
3,534,616	+				+0.4
3,534,625	-				-1.3
3,534,632	+				+1.3
3,534,684	-				+0.3
3,534,724	-				+0.2
3,534,783	-				+0.6
3,534,851	-				-1.0
3,534,851	-				-1.1
3,534,852	+				-1.3
3,534,861	-				+1.2
3,534,861	-				+0.6
3,534,889	+	greB	b3406	0.12	-0.7
3,534,889	+	greB	b3406	0.12	-1.1
3,534,940	-	greB	b3406	0.22	-1.9
3,534,940	-	greB	b3406	0.22	-0.1
3,534,988	-	greB	b3406	0.32	+0.2
3,535,024	+	greB	b3406	0.40	+0.4
3,535,027	-	greB	b3406	0.40	-1.7
3,535,027	-	greB	b3406	0.40	-0.2
3,535,030	-	greB	b3406	0.41	-0.1
3,535,066	-	greB	b3406	0.49	+0.6
3,535,094	-	greB	b3406	0.55	+0.1
3,535,099	+	greB	b3406	0.56	+0.4
3,535,149	+	greB	b3406	0.66	-0.5
3,535,257	-	greB	b3406	0.89	+0.3
3,535,257	-	greB	b3406	0.89	+0.2
3,535,274	+				+0.4
3,535,287	+				-0.1
3,535,297	+				+0.1
3,535,297	+				+0.7
3,535,299	+				-0.4
3,535,305	-				+0.4
3,535,305	-				+1.4
3,535,317	+				-0.1
3,535,317	-				+0.0
3,535,325	-				+1.0
3,535,325	-				-0.5
3,535,359	+				+0.0
3,535,359	+				-1.0
3,535,361	+				+0.6
3,535,397	+				+0.4
3,535,485	-				+0.1
3,535,496	+				-0.2
3,535,496	+				+2.0
3,535,498	+				-0.7
3,535,546	+				+0.6
3,535,563	-				+1.0
3,535,563	-				+0.5
3,535,573	-				-0.2
3,535,581	+				-1.7