Strain Fitness in Pseudomonas putida KT2440 around PP_3852

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
4,375,178	+		PP_3850	0.54	-1.2
4,375,179	-		PP_3850	0.54	+0.3
4,375,222	+		PP_3850	0.70	-0.6
4,375,223	-		PP_3850	0.71	-2.0
4,375,225	+		PP_3850	0.72	-1.8
4,375,225	+		PP_3850	0.72	+0.2
4,375,225	+		PP_3850	0.72	-2.6
4,375,226	-		PP_3850	0.72	+0.1
4,375,309	+		PP_5637	0.12	+0.5
4,375,309	+		PP_5637	0.12	-0.2
4,375,309	+		PP_5637	0.12	+0.7
4,375,311	+		PP_5637	0.13	-0.7
4,375,311	+		PP_5637	0.13	+1.8
4,375,311	+		PP_5637	0.13	+0.9
4,375,311	+		PP_5637	0.13	-1.4
4,375,311	+		PP_5637	0.13	-1.9
4,375,311	+		PP_5637	0.13	+1.3
4,375,311	+		PP_5637	0.13	+1.3
4,375,311	+		PP_5637	0.13	-1.4
4,375,311	+		PP_5637	0.13	+1.8
4,375,312	-		PP_5637	0.13	-2.3
4,375,312	-		PP_5637	0.13	+1.1
4,375,312	-		PP_5637	0.13	+1.6
4,375,312	-		PP_5637	0.13	+0.4
4,375,312	-		PP_5637	0.13	-0.0
4,375,312	-		PP_5637	0.13	+0.8
4,375,312	-		PP_5637	0.13	+0.5
4,375,312	-		PP_5637	0.13	-0.2
4,375,312	-		PP_5637	0.13	-1.4
4,375,332	+		PP_5637	0.21	+2.3
4,375,332	+		PP_5637	0.21	+0.5
4,375,397	+		PP_5637	0.46	-2.1
4,375,398	-		PP_5637	0.47	+1.1
4,375,421	+		PP_5637	0.55	-0.1
4,375,421	+		PP_5637	0.55	+0.2
4,375,567	+				-1.2
4,375,567	+				+1.2
4,375,567	+				+1.8
4,375,567	+				+0.2
4,375,567	+				-0.2
4,375,568	-				-0.6
4,375,568	-				-1.2
4,375,568	-				+0.0
4,375,568	-				+0.9
4,375,568	-				-0.7
4,375,606	-				-2.2
4,375,607	+				+1.5
4,375,608	-				-0.5
4,375,790	+		PP_3851	0.45	-1.1
4,375,901	+		PP_3851	0.79	+0.6
4,375,901	+		PP_3851	0.79	-1.0
4,375,902	-		PP_3851	0.79	+0.7
4,375,902	-		PP_3851	0.79	+0.7
4,375,903	+		PP_3851	0.80	-2.9
4,375,903	+				+1.2
4,375,903	+		PP_3851	0.80	-1.3
4,375,903	+		PP_3851	0.80	+0.6
4,375,904	-		PP_3851	0.80	-2.1
4,375,904	-		PP_3851	0.80	+1.2
4,375,904	-		PP_3851	0.80	+0.4
4,375,904	-		PP_3851	0.80	+0.5
4,375,921	+		PP_3851	0.85	-2.9
4,375,922	-		PP_3851	0.85	+0.9
4,375,947	+				-1.2
4,375,948	-				-0.6
4,375,964	-				+0.4
4,375,979	+				+1.6
4,375,979	+				+0.5
4,375,980	-				-2.7
4,375,980	-				+0.6
4,375,993	+				-0.2
4,375,993	+				+0.4
4,376,005	+				-0.5
4,376,005	+				+1.4
4,376,005	+				-1.5
4,376,006	-				-0.1
4,376,006	-				+0.6
4,376,006	-				+0.9
4,376,006	-				+0.6
4,376,009	+				-1.5
4,376,009	+				+0.6
4,376,009	+				-2.7
4,376,009	+				-2.5
4,376,055	+				+0.8
4,376,056	-				+1.5
4,376,066	+				+0.9
4,376,066	+				-2.1
4,376,066	+				-0.1
4,376,067	-				-0.5
4,376,067	-				-0.5
4,376,067	-				-0.3
4,376,067	-				-1.2
4,376,067	-				-0.4
4,376,067	-				+0.7
4,376,079	-				-0.9
4,376,079	-				+1.6
4,376,214	-				+0.9
4,376,214	-				-2.8
4,376,260	+		PP_3852	0.12	-2.8
4,376,296	-		PP_3852	0.14	+1.0
4,376,296	-		PP_3852	0.14	-2.2
4,376,367	-		PP_3852	0.19	+1.1
4,376,393	+		PP_3852	0.21	+0.6
4,376,393	+		PP_3852	0.21	+1.0
4,376,433	+		PP_3852	0.23	-1.0
4,376,462	+		PP_3852	0.25	+0.6
4,376,463	-		PP_3852	0.25	+0.0
4,376,463	-		PP_3852	0.25	-2.7
4,376,481	+		PP_3852	0.27	-0.4
4,376,482	-		PP_3852	0.27	+0.1
4,376,514	-		PP_3852	0.29	+1.0
4,376,591	-		PP_3852	0.34	-2.3
4,376,644	-		PP_3852	0.38	-1.9
4,376,658	-		PP_3852	0.39	+0.6
4,376,708	+		PP_3852	0.42	-0.8
4,376,714	+		PP_3852	0.42	-1.7
4,376,714	+				+0.8
4,376,716	+		PP_3852	0.42	-0.8
4,376,718	+		PP_3852	0.43	-1.8
4,376,719	-		PP_3852	0.43	-0.2
4,376,719	-		PP_3852	0.43	+0.4
4,376,725	+		PP_3852	0.43	-2.1
4,376,821	+		PP_3852	0.50	-0.6
4,376,821	+		PP_3852	0.50	-2.2
4,376,822	-		PP_3852	0.50	-3.8
4,376,851	-		PP_3852	0.52	-1.6
4,376,879	+		PP_3852	0.53	-1.5
4,376,882	+		PP_3852	0.54	+3.1
4,376,882	+		PP_3852	0.54	-0.1
4,376,955	+		PP_3852	0.59	-2.3
4,376,960	+		PP_3852	0.59	-1.2
4,376,960	+		PP_3852	0.59	-2.4
4,376,960	+		PP_3852	0.59	-0.3
4,376,960	+		PP_3852	0.59	+0.3
4,376,960	+		PP_3852	0.59	-3.3
4,376,960	+		PP_3852	0.59	+0.8
4,376,961	-		PP_3852	0.59	-0.5
4,376,971	-		PP_3852	0.60	-1.6
4,376,978	+		PP_3852	0.60	-2.3
4,376,978	+		PP_3852	0.60	+0.1
4,377,004	-		PP_3852	0.62	+0.8
4,377,047	-		PP_3852	0.65	+0.9
4,377,115	-		PP_3852	0.69	+1.9
4,377,115	-		PP_3852	0.69	+0.5
4,377,129	-		PP_3852	0.70	+0.2
4,377,135	+		PP_3852	0.71	+0.4
4,377,135	+		PP_3852	0.71	-2.1
4,377,220	+		PP_3852	0.76	-2.9
4,377,232	+		PP_3852	0.77	+0.0
4,377,232	+		PP_3852	0.77	-3.3
4,377,253	+		PP_3852	0.79	-0.9
4,377,291	+		PP_3852	0.81	-0.2
4,377,291	+		PP_3852	0.81	+0.3
4,377,291	+		PP_3852	0.81	-3.0
4,377,291	+		PP_3852	0.81	-0.1
4,377,292	-		PP_3852	0.81	-0.2
4,377,292	-		PP_3852	0.81	-0.6
4,377,297	-		PP_3852	0.82	+1.0
4,377,297	-		PP_3852	0.82	+1.2
4,377,297	-		PP_3852	0.82	-0.8
4,377,339	+		PP_3852	0.84	+0.8
4,377,339	+		PP_3852	0.84	-0.3
4,377,339	+		PP_3852	0.84	-2.1
4,377,339	+		PP_3852	0.84	+1.1
4,377,345	+		PP_3852	0.85	+0.7
4,377,346	-		PP_3852	0.85	+0.6
4,377,376	+		PP_3852	0.87	-0.3
4,377,430	-				+1.6
4,377,502	+				+0.3
4,377,503	-				+0.6
4,377,503	-				+0.7
4,377,566	+				+0.1
4,377,566	+				+1.3
4,377,566	+				+2.2
4,377,566	+				+0.4
4,377,566	+				+0.1
4,377,567	-				+1.5
4,377,567	-				-0.5
4,377,585	-				+0.5
4,377,626	+				-0.7
4,377,626	+				+0.7
4,377,627	-				+1.5
4,377,627	-				-1.7
4,377,627	-				+1.1
4,377,641	+				-0.3
4,377,641	+				-0.3
4,377,641	+				+1.0
4,377,641	+				+0.2
4,377,642	-				-0.2
4,377,642	-				-2.1
4,377,642	-				-0.8
4,377,642	-				+0.2
4,377,642	-				+2.2
4,377,647	+				-0.4
4,377,647	+				+0.6
4,377,647	+				-0.1
4,377,647	+				+2.8
4,377,693	+				-0.6
4,377,693	+				-0.5
4,377,693	+				-0.8
4,377,693	+				+0.4
4,377,693	+				-0.7
4,377,694	-				-1.5
4,377,694	-				+0.3
4,377,694	-				+0.2
4,377,694	-				-1.5
4,377,695	+				-0.4
4,377,695	+				-0.0
4,377,695	+				-1.7
4,377,695	+				-1.6
4,377,695	+				-2.4
4,377,696	-				+0.5
4,377,696	-				+0.6
4,377,701	+		PP_5638	0.10	+0.2
4,377,701	+		PP_5638	0.10	-2.6
4,377,701	+		PP_5638	0.10	-0.6
4,377,701	+		PP_5638	0.10	-2.8
4,377,701	+		PP_5638	0.10	-1.5
4,377,702	-		PP_5638	0.11	-1.6
4,378,033	+		PP_5638	0.73	-1.5
4,378,034	-		PP_5638	0.73	-0.3
4,378,115	+		PP_5638	0.88	+1.6
4,378,258	+		PP_3854	0.16	-1.0
4,378,258	+		PP_3854	0.16	+0.3
4,378,258	+		PP_3854	0.16	+0.6
4,378,259	-		PP_3854	0.16	+0.6
4,378,456	+		PP_3854	0.52	-1.1
4,378,456	+		PP_3854	0.52	-1.0
4,378,456	+		PP_3854	0.52	+0.4
4,378,456	+		PP_3854	0.52	-0.5
4,378,457	-		PP_3854	0.53	+0.6
4,378,457	-		PP_3854	0.53	-1.3
4,378,519	+		PP_3854	0.64	+0.2
4,378,519	-		PP_3854	0.64	+0.7
4,378,520	-		PP_3854	0.64	+1.0
4,378,528	+		PP_3854	0.66	-2.8
4,378,567	+		PP_3854	0.73	+0.4
4,378,568	-		PP_3854	0.73	-2.3