Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0807 and PP_0808 are separated by 155 nucleotides PP_0808 and PP_0809 are separated by 456 nucleotides
PP_0807: PP_0807 - DNA-binding transcriptional dual regulator (NO), at 945,812 to 947,368
_0807
PP_0808: PP_0808 - Flavohemoprotein, at 947,524 to 948,702
_0808
PP_0809: PP_0809 - disulfide bond formation protein B, at 949,159 to 949,665
_0809
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 946.874 kb on - strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.129 kb on + strand, within PP_0807 at 947.185 kb on + strand, within PP_0807 at 947.290 kb on - strand at 947.564 kb on + strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.565 kb on - strand at 947.609 kb on - strand at 947.609 kb on - strand at 947.630 kb on - strand at 947.713 kb on + strand, within PP_0808 at 947.713 kb on + strand, within PP_0808 at 947.714 kb on - strand, within PP_0808 at 947.948 kb on - strand, within PP_0808 at 947.949 kb on + strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 947.950 kb on - strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.094 kb on + strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.095 kb on - strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.142 kb on + strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.143 kb on - strand, within PP_0808 at 948.220 kb on + strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.221 kb on - strand, within PP_0808 at 948.249 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.481 kb on + strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.482 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.488 kb on - strand, within PP_0808 at 948.586 kb on + strand at 948.586 kb on + strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.587 kb on - strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.705 kb on + strand at 948.706 kb on - strand at 948.706 kb on - strand at 948.750 kb on + strand at 948.750 kb on + strand at 948.751 kb on - strand at 948.751 kb on - strand at 948.785 kb on - strand at 948.796 kb on + strand at 948.814 kb on + strand at 948.815 kb on - strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.822 kb on + strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.823 kb on - strand at 948.824 kb on + strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.825 kb on - strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.863 kb on + strand at 948.864 kb on - strand at 948.864 kb on - strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.865 kb on + strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.866 kb on - strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.867 kb on + strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.868 kb on - strand at 948.869 kb on + strand at 948.869 kb on + strand at 948.870 kb on - strand at 948.907 kb on + strand at 948.907 kb on + strand at 948.908 kb on - strand at 948.908 kb on - strand at 948.918 kb on + strand at 949.102 kb on + strand at 949.102 kb on + strand at 949.139 kb on - strand at 949.249 kb on + strand, within PP_0809 at 949.249 kb on + strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.250 kb on - strand, within PP_0809 at 949.303 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.435 kb on + strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.436 kb on - strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.437 kb on + strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.438 kb on - strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.439 kb on + strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.440 kb on - strand, within PP_0809 at 949.642 kb on + strand at 949.642 kb on + strand at 949.642 kb on + strand at 949.643 kb on - strand at 949.643 kb on - strand at 949.663 kb on + strand at 949.663 kb on + strand at 949.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 946,874 - PP_0807 0.68 +1.0 947,129 + PP_0807 0.85 +1.7 947,129 + PP_0807 0.85 -2.4 947,185 + PP_0807 0.88 +0.7 947,290 - +0.5 947,564 + +1.1 947,565 - +1.2 947,565 - -0.3 947,565 - -2.2 947,609 - -0.4 947,609 - +0.9 947,630 - +1.6 947,713 + PP_0808 0.16 -1.9 947,713 + PP_0808 0.16 -1.4 947,714 - PP_0808 0.16 -1.0 947,948 - PP_0808 0.36 -2.0 947,949 + PP_0808 0.36 -1.2 947,950 - PP_0808 0.36 +0.5 947,950 - PP_0808 0.36 +1.6 947,950 - PP_0808 0.36 +1.1 948,094 + PP_0808 0.48 +2.1 948,094 + PP_0808 0.48 +2.0 948,095 - PP_0808 0.48 +0.2 948,095 - PP_0808 0.48 -0.9 948,095 - PP_0808 0.48 +0.3 948,142 + PP_0808 0.52 +1.1 948,142 + PP_0808 0.52 +1.2 948,142 + PP_0808 0.52 -2.2 948,143 - PP_0808 0.53 -0.1 948,143 - PP_0808 0.53 +3.5 948,220 + PP_0808 0.59 +2.5 948,221 - PP_0808 0.59 +0.3 948,221 - PP_0808 0.59 -1.3 948,249 + PP_0808 0.61 -0.2 948,481 + PP_0808 0.81 -0.9 948,481 + PP_0808 0.81 +0.0 948,481 + PP_0808 0.81 -2.0 948,481 + PP_0808 0.81 -1.5 948,481 + PP_0808 0.81 +0.7 948,481 + PP_0808 0.81 -1.9 948,482 - PP_0808 0.81 -2.1 948,482 - PP_0808 0.81 -0.9 948,482 - PP_0808 0.81 +0.1 948,482 - PP_0808 0.81 +0.5 948,482 - PP_0808 0.81 +0.3 948,482 - PP_0808 0.81 -1.7 948,482 - PP_0808 0.81 -2.5 948,488 - PP_0808 0.82 +1.1 948,488 - PP_0808 0.82 +0.9 948,488 - PP_0808 0.82 -0.6 948,488 - PP_0808 0.82 +1.0 948,586 + +0.4 948,586 + -0.0 948,587 - +1.5 948,587 - -1.8 948,587 - +0.3 948,705 + +0.7 948,705 + +0.8 948,705 + -1.0 948,706 - +0.3 948,706 - -2.2 948,750 + +0.8 948,750 + +0.3 948,751 - +2.4 948,751 - +2.4 948,785 - -0.9 948,796 + -0.1 948,814 + -1.0 948,815 - -0.7 948,822 + +0.8 948,822 + -2.5 948,822 + -0.5 948,823 - +0.1 948,823 - +0.3 948,823 - +0.2 948,823 - -1.0 948,823 - +2.7 948,824 + +0.3 948,825 - +0.2 948,825 - -2.2 948,825 - -0.1 948,863 + +1.1 948,863 + +1.1 948,863 + +2.1 948,863 + -0.9 948,863 + +0.8 948,864 - -2.0 948,864 - -0.3 948,865 + -0.8 948,865 + +0.2 948,865 + -0.9 948,865 + -2.1 948,866 - +1.6 948,866 - -0.5 948,866 - -1.2 948,866 - -1.3 948,866 - -0.3 948,867 + -1.0 948,867 + +1.0 948,867 + -2.3 948,867 + -0.4 948,867 + +0.6 948,867 + +1.6 948,867 + -2.4 948,868 - -1.0 948,868 - -1.5 948,868 - +0.8 948,868 - -0.7 948,868 - -1.3 948,868 - -0.7 948,868 - -0.6 948,868 - +1.2 948,868 - -1.8 948,869 + -0.9 948,869 + -0.2 948,870 - -0.2 948,907 + +0.9 948,907 + -1.1 948,908 - -0.6 948,908 - +2.8 948,918 + +0.4 949,102 + +0.2 949,102 + +1.0 949,139 - -0.8 949,249 + PP_0809 0.18 +2.8 949,249 + PP_0809 0.18 +0.5 949,250 - PP_0809 0.18 +1.1 949,250 - PP_0809 0.18 -0.2 949,250 - PP_0809 0.18 -0.8 949,303 + PP_0809 0.28 -0.0 949,435 + PP_0809 0.54 +1.3 949,435 + PP_0809 0.54 +2.1 949,435 + PP_0809 0.54 +1.2 949,435 + PP_0809 0.54 -1.3 949,435 + PP_0809 0.54 -0.4 949,435 + PP_0809 0.54 +1.0 949,435 + PP_0809 0.54 +1.6 949,435 + PP_0809 0.54 +0.5 949,435 + PP_0809 0.54 +1.9 949,435 + PP_0809 0.54 +2.8 949,436 - PP_0809 0.55 +3.2 949,436 - PP_0809 0.55 +0.7 949,436 - PP_0809 0.55 +4.5 949,436 - PP_0809 0.55 +0.8 949,436 - PP_0809 0.55 +0.1 949,437 + PP_0809 0.55 +0.9 949,437 + PP_0809 0.55 +1.1 949,437 + PP_0809 0.55 +0.2 949,437 + PP_0809 0.55 +3.5 949,438 - PP_0809 0.55 +2.0 949,438 - PP_0809 0.55 -0.2 949,438 - PP_0809 0.55 +2.7 949,438 - PP_0809 0.55 +0.1 949,438 - PP_0809 0.55 -1.4 949,438 - PP_0809 0.55 -0.2 949,439 + PP_0809 0.55 +1.5 949,439 + PP_0809 0.55 -0.4 949,439 + PP_0809 0.55 -0.8 949,439 + PP_0809 0.55 +1.2 949,440 - PP_0809 0.55 -0.1 949,440 - PP_0809 0.55 +3.4 949,440 - PP_0809 0.55 +3.9 949,642 + -1.1 949,642 + -1.8 949,642 + +0.5 949,643 - +1.2 949,643 - +2.5 949,663 + -2.8 949,663 + +1.3 949,664 - -1.0
Or see this region's nucleotide sequence