Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0335 and PP_0336 are separated by 3 nucleotides PP_0336 and PP_0337 are separated by 168 nucleotides
PP_0335: PP_0335 - Glutathione S-transferase family protein, at 401,902 to 402,525
_0335
PP_0336: PP_0336 - Peptide methionine sulfoxide reductase MsrA, at 402,529 to 403,197
_0336
PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056
_0337
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.666 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.702 kb on + strand at 401.702 kb on + strand at 401.703 kb on - strand at 401.723 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.728 kb on - strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.749 kb on - strand at 401.749 kb on - strand at 401.752 kb on + strand at 401.752 kb on + strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.849 kb on + strand at 401.850 kb on - strand at 401.873 kb on + strand at 401.873 kb on + strand at 401.954 kb on + strand at 401.955 kb on - strand at 401.955 kb on - strand at 402.018 kb on - strand, within PP_0335 at 402.180 kb on - strand, within PP_0335 at 402.223 kb on + strand, within PP_0335 at 402.224 kb on - strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.534 kb on + strand at 402.608 kb on + strand, within PP_0336 at 402.608 kb on + strand, within PP_0336 at 402.621 kb on - strand, within PP_0336 at 402.635 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.852 kb on - strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.216 kb on - strand at 403.267 kb on + strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.341 kb on - strand at 403.341 kb on - strand at 403.343 kb on - strand at 403.343 kb on - strand at 403.356 kb on + strand at 403.356 kb on + strand at 403.389 kb on - strand at 403.442 kb on + strand at 403.641 kb on + strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 404.087 kb on + strand, within PP_0337 at 404.087 kb on + strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.150 kb on + strand, within PP_0337 at 404.150 kb on + strand, within PP_0337 at 404.151 kb on - strand, within PP_0337 at 404.189 kb on - strand, within PP_0337
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 401,662 + +2.6 401,662 + -3.0 401,662 + -1.3 401,662 + +1.9 401,666 + -1.7 401,684 + -1.5 401,684 + -1.5 401,684 + -0.9 401,684 + -2.0 401,684 + -1.2 401,702 + +2.5 401,702 + -0.4 401,703 - +0.6 401,723 + -0.5 401,727 + -0.8 401,727 + -2.4 401,727 + -2.1 401,727 + -2.2 401,728 - +0.2 401,748 + +1.1 401,748 + +0.4 401,748 + -0.9 401,748 + -0.5 401,748 + -0.6 401,748 + +0.1 401,748 + -0.6 401,748 + +0.9 401,749 - -1.9 401,749 - -0.5 401,752 + -0.6 401,752 + -0.9 401,753 - +0.2 401,753 - +0.1 401,753 - +1.2 401,753 - +0.5 401,780 + +0.7 401,780 + +1.2 401,780 + +1.7 401,781 - -2.6 401,781 - -0.7 401,781 - +1.6 401,781 - -0.3 401,849 + -0.1 401,850 - +0.6 401,873 + +0.4 401,873 + -2.4 401,954 + -1.4 401,955 - +1.0 401,955 - +0.3 402,018 - PP_0335 0.19 -1.7 402,180 - PP_0335 0.45 -2.4 402,223 + PP_0335 0.51 +0.4 402,224 - PP_0335 0.52 +1.4 402,412 + PP_0335 0.82 -1.7 402,412 + PP_0335 0.82 -0.6 402,412 + PP_0335 0.82 +0.9 402,412 + PP_0335 0.82 -1.7 402,412 + PP_0335 0.82 -1.8 402,413 - PP_0335 0.82 -1.9 402,413 - PP_0335 0.82 -1.2 402,413 - PP_0335 0.82 +0.9 402,413 - PP_0335 0.82 -2.4 402,534 + +0.9 402,608 + PP_0336 0.12 +0.9 402,608 + PP_0336 0.12 +1.5 402,621 - PP_0336 0.14 -1.0 402,635 + PP_0336 0.16 -1.8 402,755 + PP_0336 0.34 +2.2 402,755 + PP_0336 0.34 -0.9 402,756 - PP_0336 0.34 +0.6 402,756 - PP_0336 0.34 +0.6 402,756 - PP_0336 0.34 -1.8 402,852 - PP_0336 0.48 +1.8 402,926 + PP_0336 0.59 -1.8 402,926 + PP_0336 0.59 -1.3 402,926 + PP_0336 0.59 +0.2 402,926 + PP_0336 0.59 +0.1 402,926 + PP_0336 0.59 -0.3 402,927 - PP_0336 0.59 -1.4 402,927 - PP_0336 0.59 +0.1 402,930 + PP_0336 0.60 -2.0 402,930 + PP_0336 0.60 +0.1 402,930 + PP_0336 0.60 +0.0 402,930 + PP_0336 0.60 +1.0 402,930 + PP_0336 0.60 +1.6 403,094 + PP_0336 0.84 -1.6 403,094 + PP_0336 0.84 +1.3 403,095 - PP_0336 0.85 +1.7 403,095 - PP_0336 0.85 -1.6 403,095 - PP_0336 0.85 -0.1 403,216 - -0.3 403,267 + +1.0 403,268 - -1.6 403,268 - -0.3 403,268 - -0.4 403,340 + +0.7 403,340 + +0.3 403,340 + -0.2 403,340 + -1.7 403,340 + -0.8 403,341 - -1.1 403,341 - -1.6 403,343 - +1.3 403,343 - -2.6 403,356 + +0.7 403,356 + -1.4 403,389 - -0.4 403,442 + -1.0 403,641 + PP_0337 0.10 -0.6 403,874 - PP_0337 0.19 -0.0 403,874 - PP_0337 0.19 -0.1 403,874 - PP_0337 0.19 -0.2 403,874 - PP_0337 0.19 -0.2 404,087 + PP_0337 0.27 -1.2 404,087 + PP_0337 0.27 -1.7 404,088 - PP_0337 0.27 -2.2 404,088 - PP_0337 0.27 +1.4 404,088 - PP_0337 0.27 +1.6 404,150 + PP_0337 0.29 -0.4 404,150 + PP_0337 0.29 -3.0 404,151 - PP_0337 0.29 -1.4 404,189 - PP_0337 0.31 +0.9
Or see this region's nucleotide sequence