Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0238 and PP_0239 are separated by 10 nucleotides PP_0239 and PP_0240 overlap by 4 nucleotides PP_0240 and PP_0241 are separated by 27 nucleotides
PP_0238: PP_0238 - alkanesulfonate monooxygenase, at 292,644 to 293,792
_0238
PP_0239: PP_0239 - aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate, at 293,803 to 294,600
_0239
PP_0240: PP_0240 - Aliphatic sulfonates import ATP-binding protein SsuB, at 294,597 to 295,409
_0240
PP_0241: PP_0241 - Transporter, at 295,437 to 295,652
_0241
Position (kb) 293
294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 292.870 kb on + strand, within PP_0238 at 292.871 kb on - strand, within PP_0238 at 293.113 kb on + strand, within PP_0238 at 293.114 kb on - strand, within PP_0238 at 293.133 kb on + strand, within PP_0238 at 293.167 kb on - strand, within PP_0238 at 293.309 kb on - strand, within PP_0238 at 293.599 kb on - strand, within PP_0238 at 293.618 kb on + strand at 293.618 kb on + strand, within PP_0238 at 293.618 kb on + strand, within PP_0238 at 293.619 kb on - strand, within PP_0238 at 293.619 kb on - strand, within PP_0238 at 293.659 kb on - strand, within PP_0238 at 293.727 kb on + strand at 293.728 kb on - strand at 293.731 kb on + strand at 293.731 kb on + strand at 293.732 kb on - strand at 293.732 kb on - strand at 293.732 kb on - strand at 293.732 kb on - strand at 293.877 kb on - strand at 293.916 kb on + strand, within PP_0239 at 293.931 kb on + strand, within PP_0239 at 293.931 kb on + strand, within PP_0239 at 294.108 kb on - strand, within PP_0239 at 294.223 kb on + strand, within PP_0239 at 294.231 kb on + strand, within PP_0239 at 294.232 kb on - strand, within PP_0239 at 294.236 kb on - strand, within PP_0239 at 294.250 kb on - strand, within PP_0239 at 294.287 kb on - strand, within PP_0239 at 294.476 kb on + strand, within PP_0239 at 294.496 kb on + strand, within PP_0239 at 294.496 kb on + strand, within PP_0239 at 294.497 kb on - strand, within PP_0239 at 294.572 kb on - strand at 294.572 kb on - strand at 295.168 kb on + strand, within PP_0240 at 295.168 kb on + strand, within PP_0240 at 295.169 kb on - strand, within PP_0240 at 295.169 kb on - strand, within PP_0240 at 295.372 kb on + strand at 295.373 kb on - strand at 295.442 kb on + strand at 295.443 kb on - strand at 295.443 kb on - strand at 295.443 kb on - strand at 295.478 kb on + strand, within PP_0241 at 295.479 kb on - strand, within PP_0241 at 295.559 kb on + strand, within PP_0241 at 295.560 kb on - strand, within PP_0241
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 292,870 + PP_0238 0.20 +1.4 292,871 - PP_0238 0.20 +0.7 293,113 + PP_0238 0.41 -1.8 293,114 - PP_0238 0.41 +0.9 293,133 + PP_0238 0.43 -0.8 293,167 - PP_0238 0.46 +0.8 293,309 - PP_0238 0.58 +0.8 293,599 - PP_0238 0.83 +1.7 293,618 + +3.2 293,618 + PP_0238 0.85 -1.6 293,618 + PP_0238 0.85 +0.9 293,619 - PP_0238 0.85 +0.7 293,619 - PP_0238 0.85 +0.8 293,659 - PP_0238 0.88 -0.7 293,727 + -2.1 293,728 - +1.2 293,731 + -0.2 293,731 + +0.5 293,732 - +0.2 293,732 - -2.0 293,732 - +0.5 293,732 - +1.8 293,877 - +0.1 293,916 + PP_0239 0.14 -0.0 293,931 + PP_0239 0.16 +1.1 293,931 + PP_0239 0.16 +1.4 294,108 - PP_0239 0.38 -1.6 294,223 + PP_0239 0.53 +0.3 294,231 + PP_0239 0.54 +0.0 294,232 - PP_0239 0.54 -0.7 294,236 - PP_0239 0.54 +0.3 294,250 - PP_0239 0.56 +1.8 294,287 - PP_0239 0.61 -1.7 294,476 + PP_0239 0.84 -1.3 294,496 + PP_0239 0.87 -1.7 294,496 + PP_0239 0.87 -1.4 294,497 - PP_0239 0.87 +0.9 294,572 - -3.1 294,572 - +1.3 295,168 + PP_0240 0.70 +0.3 295,168 + PP_0240 0.70 -2.0 295,169 - PP_0240 0.70 +1.1 295,169 - PP_0240 0.70 +0.9 295,372 + -2.5 295,373 - +1.2 295,442 + +2.3 295,443 - +1.0 295,443 - -0.3 295,443 - -0.3 295,478 + PP_0241 0.19 +1.1 295,479 - PP_0241 0.19 -2.3 295,559 + PP_0241 0.56 -0.6 295,560 - PP_0241 0.57 -0.5
Or see this region's nucleotide sequence