Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0229 and PP_0230 are separated by 62 nucleotides PP_0230 and PP_0231 are separated by 48 nucleotides PP_0231 and PP_0232 overlap by 4 nucleotides
PP_0229: PP_0229 - choline/carnitine/betaine transporter, at 282,550 to 284,553
_0229
PP_0230: PP_0230 - alpha-ketoglutarate-dependent sulfonate dioxygenase, at 284,616 to 285,449
_0230
PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337
_0231
PP_0232: PP_0232 - ATP-binding taurine transporter subunit, at 286,334 to 287,122
_0232
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.689 kb on - strand, within PP_0229 at 283.689 kb on - strand, within PP_0229 at 283.747 kb on + strand, within PP_0229 at 283.747 kb on + strand, within PP_0229 at 283.747 kb on + strand, within PP_0229 at 283.765 kb on + strand, within PP_0229 at 283.766 kb on - strand, within PP_0229 at 283.912 kb on - strand, within PP_0229 at 284.059 kb on + strand, within PP_0229 at 284.059 kb on + strand, within PP_0229 at 284.060 kb on - strand, within PP_0229 at 284.060 kb on - strand, within PP_0229 at 284.261 kb on + strand, within PP_0229 at 284.283 kb on + strand, within PP_0229 at 284.284 kb on - strand, within PP_0229 at 284.338 kb on + strand, within PP_0229 at 284.339 kb on - strand, within PP_0229 at 284.339 kb on - strand, within PP_0229 at 284.359 kb on + strand at 284.360 kb on - strand at 284.360 kb on - strand at 284.461 kb on + strand at 284.461 kb on + strand at 284.461 kb on + strand at 284.461 kb on + strand at 284.462 kb on - strand at 284.462 kb on - strand at 284.462 kb on - strand at 284.533 kb on + strand at 284.533 kb on + strand at 284.533 kb on + strand at 285.092 kb on - strand, within PP_0230 at 285.377 kb on + strand at 285.823 kb on - strand, within PP_0231 at 285.877 kb on + strand, within PP_0231 at 285.878 kb on - strand, within PP_0231 at 285.878 kb on - strand, within PP_0231 at 286.007 kb on - strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.114 kb on + strand, within PP_0231 at 286.115 kb on - strand, within PP_0231 at 286.218 kb on + strand, within PP_0231
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 283,689 - PP_0229 0.57 +0.4 283,689 - PP_0229 0.57 +0.1 283,747 + PP_0229 0.60 -2.0 283,747 + PP_0229 0.60 -1.1 283,747 + PP_0229 0.60 -0.2 283,765 + PP_0229 0.61 -0.1 283,766 - PP_0229 0.61 -0.3 283,912 - PP_0229 0.68 +0.3 284,059 + PP_0229 0.75 +0.5 284,059 + PP_0229 0.75 +0.2 284,060 - PP_0229 0.75 +0.6 284,060 - PP_0229 0.75 +2.0 284,261 + PP_0229 0.85 -1.0 284,283 + PP_0229 0.86 +0.3 284,284 - PP_0229 0.87 +1.0 284,338 + PP_0229 0.89 +0.4 284,339 - PP_0229 0.89 -1.3 284,339 - PP_0229 0.89 +0.7 284,359 + +1.2 284,360 - -0.4 284,360 - +0.5 284,461 + +0.5 284,461 + -1.6 284,461 + +1.0 284,461 + -0.0 284,462 - +1.0 284,462 - +0.4 284,462 - +1.0 284,533 + +2.4 284,533 + +0.2 284,533 + +1.0 285,092 - PP_0230 0.57 +0.6 285,377 + +0.7 285,823 - PP_0231 0.39 +0.5 285,877 + PP_0231 0.45 +0.1 285,878 - PP_0231 0.45 -0.3 285,878 - PP_0231 0.45 +0.9 286,007 - PP_0231 0.61 +0.5 286,114 + PP_0231 0.73 +1.0 286,114 + PP_0231 0.73 -2.6 286,114 + PP_0231 0.73 +1.8 286,114 + PP_0231 0.73 -0.6 286,114 + PP_0231 0.73 +1.0 286,114 + PP_0231 0.73 +0.8 286,115 - PP_0231 0.73 -2.8 286,218 + PP_0231 0.86 -2.5
Or see this region's nucleotide sequence