Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0409 and PP_0410 are separated by 10 nucleotides PP_0410 and PP_0411 are separated by 295 nucleotides
PP_0409: PP_0409 - Sensory box histidine kinase, at 496,129 to 498,516
_0409
PP_0410: PP_0410 - DNA-binding response regulator UhpA, at 498,527 to 499,156
_0410
PP_0411: PP_0411 - Polyamine ABC transporter, ATP-binding protein, at 499,452 to 500,576
_0411
Position (kb) 498
499
500 Strain fitness (log2 ratio) -2
-1
0
1
2 at 497.566 kb on + strand, within PP_0409 at 497.567 kb on - strand, within PP_0409 at 497.567 kb on - strand, within PP_0409 at 497.568 kb on + strand, within PP_0409 at 497.569 kb on - strand, within PP_0409 at 497.569 kb on - strand, within PP_0409 at 497.580 kb on + strand, within PP_0409 at 497.672 kb on - strand, within PP_0409 at 497.804 kb on + strand, within PP_0409 at 497.805 kb on - strand, within PP_0409 at 497.805 kb on - strand, within PP_0409 at 497.819 kb on + strand, within PP_0409 at 497.820 kb on - strand, within PP_0409 at 498.090 kb on - strand, within PP_0409 at 498.180 kb on + strand, within PP_0409 at 498.181 kb on - strand, within PP_0409 at 498.258 kb on + strand, within PP_0409 at 498.312 kb on - strand at 498.326 kb on + strand at 498.326 kb on + strand at 498.327 kb on - strand at 498.327 kb on - strand at 498.515 kb on - strand at 498.515 kb on - strand at 498.538 kb on - strand at 498.538 kb on - strand at 498.678 kb on + strand, within PP_0410 at 498.678 kb on + strand, within PP_0410 at 498.896 kb on + strand, within PP_0410 at 498.897 kb on - strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.898 kb on + strand, within PP_0410 at 498.899 kb on - strand, within PP_0410 at 498.899 kb on - strand, within PP_0410 at 498.936 kb on + strand, within PP_0410 at 498.937 kb on - strand, within PP_0410 at 498.937 kb on - strand, within PP_0410 at 499.130 kb on + strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.165 kb on + strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.166 kb on - strand at 499.192 kb on + strand at 499.193 kb on - strand at 499.193 kb on - strand at 499.239 kb on + strand at 499.240 kb on - strand at 499.240 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.340 kb on - strand at 499.378 kb on + strand at 499.410 kb on + strand at 499.411 kb on - strand at 499.422 kb on + strand at 499.521 kb on + strand at 499.522 kb on - strand at 499.522 kb on - strand at 499.522 kb on - strand at 499.716 kb on - strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.737 kb on + strand, within PP_0411 at 499.738 kb on - strand, within PP_0411 at 499.951 kb on + strand, within PP_0411 at 499.952 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411 at 500.053 kb on - strand, within PP_0411
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 497,566 + PP_0409 0.60 +0.1 497,567 - PP_0409 0.60 -0.2 497,567 - PP_0409 0.60 +0.6 497,568 + PP_0409 0.60 -0.7 497,569 - PP_0409 0.60 +0.1 497,569 - PP_0409 0.60 -0.2 497,580 + PP_0409 0.61 -2.1 497,672 - PP_0409 0.65 -0.5 497,804 + PP_0409 0.70 +1.3 497,805 - PP_0409 0.70 -0.9 497,805 - PP_0409 0.70 -0.6 497,819 + PP_0409 0.71 -1.7 497,820 - PP_0409 0.71 -0.5 498,090 - PP_0409 0.82 -0.1 498,180 + PP_0409 0.86 -1.1 498,181 - PP_0409 0.86 +0.3 498,258 + PP_0409 0.89 +0.4 498,312 - +0.3 498,326 + +0.3 498,326 + -0.7 498,327 - +1.1 498,327 - -0.3 498,515 - +0.2 498,515 - +0.2 498,538 - +0.9 498,538 - -0.3 498,678 + PP_0410 0.24 -0.3 498,678 + PP_0410 0.24 -0.8 498,896 + PP_0410 0.59 -1.9 498,897 - PP_0410 0.59 -0.4 498,898 + PP_0410 0.59 +0.1 498,898 + PP_0410 0.59 -0.5 498,898 + PP_0410 0.59 -1.1 498,899 - PP_0410 0.59 -0.9 498,899 - PP_0410 0.59 +0.4 498,936 + PP_0410 0.65 -0.9 498,937 - PP_0410 0.65 -0.8 498,937 - PP_0410 0.65 -1.6 499,130 + -1.2 499,131 - +0.2 499,131 - -0.5 499,131 - -0.0 499,131 - -0.8 499,131 - +0.3 499,131 - -1.1 499,165 + -0.2 499,166 - +0.7 499,166 - +0.8 499,166 - +0.2 499,166 - +0.1 499,166 - +1.2 499,192 + +0.7 499,193 - -0.1 499,193 - -0.5 499,239 + -0.0 499,240 - +2.0 499,240 - -0.4 499,340 - +0.1 499,340 - -1.0 499,340 - +0.8 499,378 + +1.4 499,410 + -0.5 499,411 - +1.9 499,422 + +0.3 499,521 + -0.5 499,522 - +0.2 499,522 - -0.8 499,522 - +1.9 499,716 - PP_0411 0.23 -0.2 499,737 + PP_0411 0.25 -0.4 499,737 + PP_0411 0.25 +0.5 499,737 + PP_0411 0.25 +2.0 499,738 - PP_0411 0.25 +0.3 499,951 + PP_0411 0.44 -0.6 499,952 - PP_0411 0.44 +0.1 500,053 - PP_0411 0.53 -0.3 500,053 - PP_0411 0.53 -1.0 500,053 - PP_0411 0.53 +0.5
Or see this region's nucleotide sequence