Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0338 and PP_0339 are separated by 13 nucleotides PP_0339 and PP_0340 are separated by 383 nucleotides
PP_0338: PP_0338 - AceF-S-acetyldihydrolipoate, at 406,364 to 408,004
_0338
PP_0339: PP_0339 - Pyruvate dehydrogenase E1 component, at 408,018 to 410,663
_0339
PP_0340: PP_0340 - Glutamate-ammonia-ligase adenylyltransferase, at 411,047 to 413,980
_0340
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -1
0
1
2
3 at 407.163 kb on + strand, within PP_0338 at 408.006 kb on + strand at 408.069 kb on - strand at 408.271 kb on + strand at 408.507 kb on + strand, within PP_0339 at 408.547 kb on + strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.626 kb on - strand, within PP_0339 at 408.628 kb on + strand at 408.701 kb on - strand, within PP_0339 at 408.712 kb on + strand, within PP_0339 at 408.713 kb on - strand, within PP_0339 at 408.713 kb on - strand at 408.867 kb on - strand, within PP_0339 at 408.931 kb on + strand, within PP_0339 at 408.932 kb on - strand, within PP_0339 at 408.932 kb on - strand, within PP_0339 at 409.072 kb on + strand, within PP_0339 at 409.073 kb on - strand, within PP_0339 at 409.073 kb on - strand, within PP_0339 at 409.112 kb on + strand, within PP_0339 at 409.299 kb on + strand, within PP_0339 at 409.300 kb on - strand, within PP_0339 at 409.337 kb on - strand, within PP_0339 at 409.564 kb on + strand, within PP_0339 at 409.565 kb on - strand, within PP_0339 at 409.684 kb on + strand, within PP_0339 at 409.705 kb on + strand, within PP_0339 at 409.706 kb on - strand, within PP_0339 at 409.714 kb on + strand at 410.051 kb on - strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.330 kb on - strand, within PP_0339 at 410.354 kb on + strand, within PP_0339 at 410.811 kb on + strand at 411.041 kb on + strand at 411.054 kb on + strand at 411.400 kb on + strand, within PP_0340 at 411.401 kb on - strand, within PP_0340 at 411.416 kb on - strand, within PP_0340 at 411.604 kb on + strand, within PP_0340
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 407,163 + PP_0338 0.49 +1.5 408,006 + +1.1 408,069 - +0.5 408,271 + +2.1 408,507 + PP_0339 0.18 +3.1 408,547 + PP_0339 0.20 +1.5 408,626 - PP_0339 0.23 +0.3 408,626 - PP_0339 0.23 +0.1 408,628 + -0.6 408,701 - PP_0339 0.26 +2.1 408,712 + PP_0339 0.26 -0.2 408,713 - PP_0339 0.26 +0.5 408,713 - +2.1 408,867 - PP_0339 0.32 +3.1 408,931 + PP_0339 0.35 +1.5 408,932 - PP_0339 0.35 +0.5 408,932 - PP_0339 0.35 +1.5 409,072 + PP_0339 0.40 +2.1 409,073 - PP_0339 0.40 +3.1 409,073 - PP_0339 0.40 +1.5 409,112 + PP_0339 0.41 +0.5 409,299 + PP_0339 0.48 +0.3 409,300 - PP_0339 0.48 +2.5 409,337 - PP_0339 0.50 +1.1 409,564 + PP_0339 0.58 +0.5 409,565 - PP_0339 0.58 +3.1 409,684 + PP_0339 0.63 -0.0 409,705 + PP_0339 0.64 +0.3 409,706 - PP_0339 0.64 +2.5 409,714 + +2.1 410,051 - PP_0339 0.77 +0.5 410,329 + PP_0339 0.87 +1.1 410,329 + PP_0339 0.87 +3.1 410,330 - PP_0339 0.87 +3.1 410,354 + PP_0339 0.88 +1.1 410,811 + -1.2 411,041 + -1.4 411,054 + -1.3 411,400 + PP_0340 0.12 -1.0 411,401 - PP_0340 0.12 -0.5 411,416 - PP_0340 0.13 -0.2 411,604 + PP_0340 0.19 -0.1
Or see this region's nucleotide sequence