Strain Fitness in Pseudomonas putida KT2440 around PP_0148

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0147 and PP_0148 are separated by 264 nucleotidesPP_0148 and PP_0149 are separated by 38 nucleotides PP_0147: PP_0147 - Citrate transporter, at 156,418 to 157,725 _0147 PP_0148: PP_0148 - conserved protein of unknown function, at 157,990 to 158,394 _0148 PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388 _0149 Position (kb) 157 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 157.028 kb on + strand, within PP_0147at 157.028 kb on + strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.029 kb on - strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.142 kb on + strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.143 kb on - strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.148 kb on + strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.149 kb on - strand, within PP_0147at 157.172 kb on - strand, within PP_0147at 157.201 kb on + strand, within PP_0147at 157.223 kb on - strand, within PP_0147at 157.340 kb on + strandat 157.340 kb on + strand, within PP_0147at 157.340 kb on + strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.341 kb on - strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.373 kb on + strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.374 kb on - strand, within PP_0147at 157.418 kb on - strand, within PP_0147at 157.520 kb on + strand, within PP_0147at 157.521 kb on - strand, within PP_0147at 157.577 kb on - strand, within PP_0147at 157.682 kb on + strandat 157.682 kb on + strandat 157.682 kb on + strandat 157.682 kb on + strandat 157.683 kb on - strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.731 kb on + strandat 157.732 kb on - strandat 157.817 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.839 kb on + strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.840 kb on - strandat 157.922 kb on - strandat 157.936 kb on + strandat 157.936 kb on + strandat 157.936 kb on + strandat 157.987 kb on + strandat 157.987 kb on + strandat 157.988 kb on - strandat 158.004 kb on - strandat 158.004 kb on - strandat 158.175 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.176 kb on + strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.177 kb on - strand, within PP_0148at 158.203 kb on + strand, within PP_0148at 158.251 kb on - strand, within PP_0148at 158.304 kb on - strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.319 kb on + strandat 158.319 kb on + strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.319 kb on + strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.320 kb on - strand, within PP_0148at 158.393 kb on - strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.429 kb on + strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.430 kb on - strandat 158.770 kb on + strand, within PP_0149at 158.770 kb on + strand, within PP_0149at 158.771 kb on - strand, within PP_0149at 158.880 kb on - strand, within PP_0149at 158.937 kb on + strand, within PP_0149at 159.041 kb on + strandat 159.041 kb on + strand, within PP_0149at 159.042 kb on - strand, within PP_0149at 159.042 kb on - strand, within PP_0149at 159.042 kb on - strand, within PP_0149at 159.042 kb on - strand, within PP_0149at 159.193 kb on + strand, within PP_0149at 159.193 kb on + strand, within PP_0149at 159.193 kb on + strand, within PP_0149at 159.193 kb on + strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.194 kb on - strand, within PP_0149at 159.295 kb on + strand, within PP_0149at 159.295 kb on + strand, within PP_0149at 159.296 kb on - strand, within PP_0149at 159.343 kb on + strand, within PP_0149

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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157,028 + PP_0147 0.47 -0.6
157,028 + PP_0147 0.47 +1.1
157,029 - PP_0147 0.47 +1.7
157,029 - PP_0147 0.47 +0.2
157,142 + PP_0147 0.55 -0.6
157,142 + PP_0147 0.55 -0.2
157,142 + PP_0147 0.55 +1.0
157,142 + PP_0147 0.55 +1.3
157,142 + PP_0147 0.55 +1.3
157,142 + PP_0147 0.55 +0.1
157,143 - PP_0147 0.55 -1.6
157,143 - PP_0147 0.55 -0.1
157,143 - PP_0147 0.55 -0.4
157,148 + PP_0147 0.56 +0.3
157,148 + PP_0147 0.56 -0.4
157,149 - PP_0147 0.56 +0.6
157,149 - PP_0147 0.56 -0.0
157,149 - PP_0147 0.56 -0.3
157,149 - PP_0147 0.56 -2.4
157,172 - PP_0147 0.58 -0.1
157,201 + PP_0147 0.60 -0.3
157,223 - PP_0147 0.62 +1.3
157,340 + +1.3
157,340 + PP_0147 0.70 -3.4
157,340 + PP_0147 0.70 -2.2
157,341 - PP_0147 0.71 -0.2
157,341 - PP_0147 0.71 +0.6
157,373 + PP_0147 0.73 -2.0
157,373 + PP_0147 0.73 -0.6
157,373 + PP_0147 0.73 +3.2
157,373 + PP_0147 0.73 -1.0
157,373 + PP_0147 0.73 -1.5
157,373 + PP_0147 0.73 +0.5
157,374 - PP_0147 0.73 +0.9
157,374 - PP_0147 0.73 +0.5
157,374 - PP_0147 0.73 +0.7
157,418 - PP_0147 0.76 +0.2
157,520 + PP_0147 0.84 +0.5
157,521 - PP_0147 0.84 -0.4
157,577 - PP_0147 0.89 +2.1
157,682 + +1.3
157,682 + +0.2
157,682 + -1.8
157,682 + +1.8
157,683 - +1.8
157,731 + -0.4
157,731 + +0.3
157,731 + -1.9
157,731 + -0.2
157,732 - +0.5
157,817 + -0.2
157,839 + -0.7
157,839 + -2.5
157,839 + +1.0
157,839 + +0.4
157,839 + -1.6
157,839 + +1.1
157,839 + +0.2
157,840 - +0.1
157,840 - -1.2
157,840 - +2.1
157,840 - +0.2
157,840 - -0.1
157,922 - +1.9
157,936 + +0.3
157,936 + +0.5
157,936 + -0.6
157,987 + -0.4
157,987 + -0.5
157,988 - -0.1
158,004 - -0.2
158,004 - -2.2
158,175 + PP_0148 0.46 -1.0
158,176 + PP_0148 0.46 +0.0
158,176 + PP_0148 0.46 -0.0
158,176 + PP_0148 0.46 -0.9
158,176 + PP_0148 0.46 -1.2
158,176 + PP_0148 0.46 -2.7
158,176 + PP_0148 0.46 -0.7
158,176 + PP_0148 0.46 +0.6
158,177 - PP_0148 0.46 -0.9
158,177 - PP_0148 0.46 -1.1
158,177 - PP_0148 0.46 -0.5
158,177 - PP_0148 0.46 +0.1
158,203 + PP_0148 0.53 -0.5
158,251 - PP_0148 0.64 -0.5
158,304 - PP_0148 0.78 -0.3
158,319 + PP_0148 0.81 +0.5
158,319 + +3.0
158,319 + PP_0148 0.81 -1.0
158,319 + PP_0148 0.81 -0.4
158,319 + PP_0148 0.81 -1.9
158,320 - PP_0148 0.81 -2.9
158,320 - PP_0148 0.81 -1.0
158,320 - PP_0148 0.81 +0.8
158,320 - PP_0148 0.81 -0.5
158,320 - PP_0148 0.81 -1.2
158,393 - +0.4
158,429 + -0.7
158,429 + +0.2
158,429 + +1.0
158,429 + -1.5
158,429 + +0.6
158,430 - -0.2
158,430 - +0.4
158,430 - +0.1
158,430 - +1.2
158,430 - -0.9
158,430 - +1.8
158,430 - +0.5
158,430 - +1.0
158,430 - +0.0
158,430 - -1.0
158,430 - -0.8
158,770 + PP_0149 0.17 -0.4
158,770 + PP_0149 0.17 -0.8
158,771 - PP_0149 0.17 +0.5
158,880 - PP_0149 0.23 +0.2
158,937 + PP_0149 0.26 -0.8
159,041 + +1.5
159,041 + PP_0149 0.31 +1.0
159,042 - PP_0149 0.31 +2.4
159,042 - PP_0149 0.31 -0.7
159,042 - PP_0149 0.31 -0.0
159,042 - PP_0149 0.31 -1.1
159,193 + PP_0149 0.39 -0.5
159,193 + PP_0149 0.39 -0.7
159,193 + PP_0149 0.39 -1.0
159,193 + PP_0149 0.39 +0.8
159,194 - PP_0149 0.39 +0.9
159,194 - PP_0149 0.39 -0.9
159,194 - PP_0149 0.39 -1.5
159,194 - PP_0149 0.39 +0.2
159,194 - PP_0149 0.39 -0.6
159,194 - PP_0149 0.39 -1.3
159,295 + PP_0149 0.44 +1.1
159,295 + PP_0149 0.44 +0.8
159,296 - PP_0149 0.44 +0.2
159,343 + PP_0149 0.47 +0.8

Or see this region's nucleotide sequence