Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
PP_5727: PP_5727 - protein of unknown function, at 5,974,781 to 5,975,056
_5727
Position (kb) 5974
5975
5976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5973.864 kb on + strand at 5973.864 kb on + strand at 5973.918 kb on - strand at 5973.922 kb on - strand at 5973.951 kb on + strand at 5973.977 kb on + strand at 5973.997 kb on - strand at 5974.113 kb on - strand at 5974.196 kb on - strand at 5974.249 kb on + strand at 5974.249 kb on + strand at 5974.252 kb on + strand at 5974.252 kb on + strand at 5974.307 kb on + strand at 5974.307 kb on + strand at 5974.307 kb on + strand at 5974.308 kb on - strand at 5974.308 kb on - strand at 5974.361 kb on + strand at 5974.362 kb on - strand at 5974.383 kb on - strand at 5974.383 kb on - strand at 5974.404 kb on - strand at 5974.433 kb on - strand at 5974.557 kb on - strand at 5974.557 kb on - strand at 5974.606 kb on + strand at 5974.776 kb on - strand at 5974.878 kb on + strand, within PP_5727 at 5974.878 kb on + strand, within PP_5727 at 5974.879 kb on - strand, within PP_5727 at 5974.879 kb on - strand, within PP_5727 at 5974.879 kb on - strand, within PP_5727 at 5974.932 kb on + strand, within PP_5727 at 5974.933 kb on - strand, within PP_5727 at 5974.933 kb on - strand, within PP_5727 at 5974.937 kb on - strand, within PP_5727 at 5974.952 kb on - strand, within PP_5727 at 5974.953 kb on + strand, within PP_5727 at 5974.953 kb on + strand, within PP_5727 at 5974.954 kb on - strand, within PP_5727 at 5974.954 kb on - strand, within PP_5727 at 5974.954 kb on - strand, within PP_5727 at 5974.970 kb on + strand, within PP_5727 at 5974.970 kb on + strand, within PP_5727 at 5974.971 kb on - strand, within PP_5727 at 5975.051 kb on - strand at 5975.103 kb on + strand at 5975.114 kb on + strand at 5975.615 kb on + strand at 5975.678 kb on + strand at 5975.764 kb on + strand at 5975.764 kb on + strand at 5975.774 kb on + strand at 5975.774 kb on + strand at 5975.774 kb on + strand at 5975.775 kb on - strand at 5975.775 kb on - strand at 5975.919 kb on + strand at 5975.919 kb on + strand at 5975.921 kb on + strand at 5975.921 kb on + strand at 5975.922 kb on - strand at 5975.922 kb on - strand at 5975.922 kb on - strand at 5976.018 kb on - strand at 5976.024 kb on + strand at 5976.024 kb on + strand at 5976.025 kb on - strand at 5976.025 kb on - strand at 5976.025 kb on - strand at 5976.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,973,864 + +0.0 5,973,864 + +1.8 5,973,918 - -0.6 5,973,922 - +0.4 5,973,951 + -0.1 5,973,977 + +0.3 5,973,997 - +0.6 5,974,113 - -1.2 5,974,196 - -1.8 5,974,249 + +0.5 5,974,249 + +0.8 5,974,252 + +0.9 5,974,252 + -0.7 5,974,307 + +1.8 5,974,307 + +0.8 5,974,307 + -0.4 5,974,308 - -0.1 5,974,308 - -0.1 5,974,361 + +0.0 5,974,362 - -1.0 5,974,383 - +0.2 5,974,383 - -2.0 5,974,404 - -1.2 5,974,433 - -0.1 5,974,557 - +0.0 5,974,557 - +0.2 5,974,606 + -1.8 5,974,776 - +1.1 5,974,878 + PP_5727 0.35 +0.4 5,974,878 + PP_5727 0.35 +0.2 5,974,879 - PP_5727 0.36 -0.4 5,974,879 - PP_5727 0.36 +0.9 5,974,879 - PP_5727 0.36 +0.2 5,974,932 + PP_5727 0.55 +1.3 5,974,933 - PP_5727 0.55 +0.6 5,974,933 - PP_5727 0.55 +1.3 5,974,937 - PP_5727 0.57 +0.2 5,974,952 - PP_5727 0.62 +0.3 5,974,953 + PP_5727 0.62 -0.1 5,974,953 + PP_5727 0.62 -1.3 5,974,954 - PP_5727 0.63 +0.0 5,974,954 - PP_5727 0.63 +1.1 5,974,954 - PP_5727 0.63 +0.2 5,974,970 + PP_5727 0.68 +2.3 5,974,970 + PP_5727 0.68 +1.1 5,974,971 - PP_5727 0.69 +1.1 5,975,051 - +0.5 5,975,103 + +0.2 5,975,114 + -2.2 5,975,615 + +0.7 5,975,678 + -3.0 5,975,764 + +0.8 5,975,764 + -0.5 5,975,774 + +0.3 5,975,774 + +0.9 5,975,774 + -1.4 5,975,775 - +0.6 5,975,775 - -0.2 5,975,919 + +0.4 5,975,919 + -0.1 5,975,921 + +0.2 5,975,921 + -0.0 5,975,922 - +0.4 5,975,922 - +0.4 5,975,922 - -1.4 5,976,018 - -0.5 5,976,024 + +0.6 5,976,024 + -0.1 5,976,025 - -0.1 5,976,025 - +1.4 5,976,025 - -0.9 5,976,032 - -0.3
Or see this region's nucleotide sequence