Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5106 and PP_5107 are separated by 64 nucleotides PP_5107 and PP_5108 are separated by 198 nucleotides PP_5108 and PP_5109 are separated by 111 nucleotides
PP_5106: PP_5106 - conserved inner membrane protein, at 5,826,652 to 5,827,023
_5106
PP_5107: PP_5107 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 5,827,088 to 5,827,798
_5107
PP_5108: PP_5108 - RNA polymerase factor sigma-32, at 5,827,997 to 5,828,851
_5108
PP_5109: PP_5109 - membrane component of the ABC transporter FtsEX involved in cellular division, at 5,828,963 to 5,829,988
_5109
Position (kb) 5827
5828
5829 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5827.038 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.051 kb on + strand at 5827.051 kb on + strand at 5827.052 kb on - strand at 5827.052 kb on - strand at 5827.103 kb on - strand at 5827.215 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.836 kb on - strand at 5827.901 kb on + strand at 5827.902 kb on - strand at 5828.869 kb on - strand at 5828.919 kb on - strand at 5828.919 kb on - strand at 5828.958 kb on - strand at 5829.017 kb on - strand at 5829.017 kb on - strand at 5829.019 kb on - strand at 5829.096 kb on + strand, within PP_5109 at 5829.096 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.186 kb on + strand, within PP_5109 at 5829.187 kb on - strand, within PP_5109 at 5829.187 kb on - strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.201 kb on + strand, within PP_5109 at 5829.222 kb on + strand, within PP_5109 at 5829.223 kb on - strand, within PP_5109 at 5829.266 kb on - strand, within PP_5109 at 5829.305 kb on + strand, within PP_5109 at 5829.306 kb on - strand, within PP_5109 at 5829.309 kb on - strand, within PP_5109 at 5829.591 kb on + strand, within PP_5109 at 5829.591 kb on + strand, within PP_5109 at 5829.592 kb on - strand, within PP_5109 at 5829.592 kb on - strand, within PP_5109 at 5829.675 kb on + strand, within PP_5109
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,827,038 + -0.7 5,827,049 + +0.5 5,827,049 + +0.6 5,827,049 + +0.2 5,827,049 + +0.1 5,827,050 - -1.5 5,827,050 - +1.2 5,827,050 - +0.1 5,827,050 - -0.8 5,827,050 - +0.2 5,827,051 + +0.6 5,827,051 + -0.2 5,827,052 - +0.2 5,827,052 - -1.0 5,827,103 - +0.1 5,827,215 + PP_5107 0.18 -1.5 5,827,541 + PP_5107 0.64 +1.6 5,827,541 + PP_5107 0.64 -0.3 5,827,541 + PP_5107 0.64 -1.5 5,827,542 - PP_5107 0.64 -0.2 5,827,542 - PP_5107 0.64 -0.0 5,827,542 - PP_5107 0.64 -2.1 5,827,703 + PP_5107 0.86 -0.2 5,827,703 + PP_5107 0.86 -0.2 5,827,836 - -0.2 5,827,901 + -0.1 5,827,902 - +0.6 5,828,869 - +1.7 5,828,919 - +0.5 5,828,919 - +0.5 5,828,958 - -1.9 5,829,017 - +2.2 5,829,017 - -0.3 5,829,019 - +2.3 5,829,096 + PP_5109 0.13 +0.7 5,829,096 + PP_5109 0.13 +1.3 5,829,186 + PP_5109 0.22 +0.7 5,829,186 + PP_5109 0.22 +1.4 5,829,186 + PP_5109 0.22 +0.9 5,829,186 + PP_5109 0.22 +1.0 5,829,187 - PP_5109 0.22 +0.7 5,829,187 - PP_5109 0.22 -1.1 5,829,201 + PP_5109 0.23 +1.9 5,829,201 + PP_5109 0.23 +2.0 5,829,201 + PP_5109 0.23 +0.6 5,829,222 + PP_5109 0.25 +0.5 5,829,223 - PP_5109 0.25 +1.3 5,829,266 - PP_5109 0.30 +0.1 5,829,305 + PP_5109 0.33 +1.5 5,829,306 - PP_5109 0.33 +1.3 5,829,309 - PP_5109 0.34 +0.5 5,829,591 + PP_5109 0.61 +1.0 5,829,591 + PP_5109 0.61 +1.6 5,829,592 - PP_5109 0.61 +2.2 5,829,592 - PP_5109 0.61 +1.0 5,829,675 + PP_5109 0.69 +0.2
Or see this region's nucleotide sequence