Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4867 and PP_4868 are separated by 509 nucleotides PP_4868 and PP_4869 are separated by 3 nucleotides PP_4869 and PP_4870 are separated by 102 nucleotides
PP_4867: PP_4867 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like), at 5,533,338 to 5,534,474
_4867
PP_4868: PP_4868 - Nicotinate phosphoribosyltransferase, at 5,534,984 to 5,536,192
_4868
PP_4869: PP_4869 - NH(3)-dependent NAD(+) synthetase, at 5,536,196 to 5,537,023
_4869
PP_4870: PP_4870 - Azurin, at 5,537,126 to 5,537,575
_4870
Position (kb) 5534
5535
5536
5537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5534.002 kb on + strand, within PP_4867 at 5534.003 kb on - strand, within PP_4867 at 5534.018 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.128 kb on + strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.129 kb on - strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.130 kb on + strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.131 kb on - strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.332 kb on + strand, within PP_4867 at 5534.333 kb on - strand, within PP_4867 at 5534.404 kb on + strand at 5534.426 kb on + strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.427 kb on - strand at 5534.430 kb on + strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.510 kb on - strand at 5534.616 kb on - strand at 5534.660 kb on + strand at 5534.660 kb on + strand at 5534.661 kb on - strand at 5534.661 kb on - strand at 5534.712 kb on + strand at 5534.713 kb on - strand at 5534.713 kb on - strand at 5534.774 kb on + strand at 5534.868 kb on + strand at 5534.869 kb on - strand at 5534.869 kb on - strand at 5535.044 kb on + strand at 5535.044 kb on + strand at 5535.140 kb on + strand, within PP_4868 at 5535.141 kb on - strand, within PP_4868 at 5535.282 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.388 kb on - strand, within PP_4868 at 5535.443 kb on + strand, within PP_4868 at 5535.444 kb on - strand, within PP_4868 at 5535.631 kb on + strand, within PP_4868 at 5535.812 kb on + strand, within PP_4868 at 5536.154 kb on + strand at 5536.167 kb on + strand at 5536.167 kb on + strand at 5537.024 kb on + strand at 5537.024 kb on + strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.025 kb on - strand at 5537.057 kb on + strand at 5537.127 kb on + strand at 5537.127 kb on + strand at 5537.191 kb on - strand, within PP_4870 at 5537.191 kb on - strand, within PP_4870
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,534,002 + PP_4867 0.58 +0.4 5,534,003 - PP_4867 0.58 +1.0 5,534,018 + PP_4867 0.60 -1.7 5,534,128 + PP_4867 0.69 -0.3 5,534,128 + PP_4867 0.69 -0.0 5,534,128 + PP_4867 0.69 +0.2 5,534,128 + PP_4867 0.69 -2.2 5,534,129 - PP_4867 0.70 +0.1 5,534,129 - PP_4867 0.70 +0.5 5,534,129 - PP_4867 0.70 -0.0 5,534,130 + PP_4867 0.70 -0.2 5,534,130 + PP_4867 0.70 +0.6 5,534,130 + PP_4867 0.70 +1.0 5,534,131 - PP_4867 0.70 -1.9 5,534,131 - PP_4867 0.70 -0.3 5,534,332 + PP_4867 0.87 -0.4 5,534,332 + PP_4867 0.87 +1.9 5,534,332 + PP_4867 0.87 -1.0 5,534,333 - PP_4867 0.88 +0.0 5,534,404 + +0.0 5,534,426 + -1.2 5,534,427 - +1.6 5,534,427 - -0.1 5,534,427 - -0.0 5,534,430 + -0.1 5,534,510 - -0.5 5,534,510 - -1.0 5,534,510 - -0.4 5,534,510 - -0.2 5,534,616 - -1.1 5,534,660 + -0.5 5,534,660 + -1.9 5,534,661 - -3.0 5,534,661 - +1.2 5,534,712 + +1.2 5,534,713 - +0.4 5,534,713 - +0.8 5,534,774 + +1.2 5,534,868 + -0.8 5,534,869 - +1.2 5,534,869 - -1.7 5,535,044 + +2.1 5,535,044 + -1.9 5,535,140 + PP_4868 0.13 +1.4 5,535,141 - PP_4868 0.13 +1.0 5,535,282 - PP_4868 0.25 +1.1 5,535,388 - PP_4868 0.33 -1.2 5,535,388 - PP_4868 0.33 +0.8 5,535,388 - PP_4868 0.33 -0.0 5,535,388 - PP_4868 0.33 +1.0 5,535,443 + PP_4868 0.38 -0.0 5,535,444 - PP_4868 0.38 -0.7 5,535,631 + PP_4868 0.54 +1.2 5,535,812 + PP_4868 0.68 -0.2 5,536,154 + -0.4 5,536,167 + -0.7 5,536,167 + -0.8 5,537,024 + -1.6 5,537,024 + +0.4 5,537,025 - -0.8 5,537,025 - -0.1 5,537,025 - -0.5 5,537,025 - +0.2 5,537,025 - -0.4 5,537,057 + +0.5 5,537,127 + -1.9 5,537,127 + +1.9 5,537,191 - PP_4870 0.14 -2.9 5,537,191 - PP_4870 0.14 -0.1
Or see this region's nucleotide sequence