Strain Fitness in Pseudomonas putida KT2440 around PP_4219

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
4,767,926	+				+0.7
4,767,927	-				+1.5
4,767,927	-				-0.8
4,768,003	+		PP_4218	0.15	-3.1
4,768,132	+		PP_4218	0.29	-0.7
4,768,132	+		PP_4218	0.29	+0.5
4,768,132	+		PP_4218	0.29	+0.9
4,768,232	-		PP_4218	0.39	+0.3
4,768,239	+		PP_4218	0.40	+1.6
4,768,240	-		PP_4218	0.40	+0.5
4,768,240	-		PP_4218	0.40	+0.0
4,768,240	-		PP_4218	0.40	+1.7
4,768,240	-		PP_4218	0.40	+1.6
4,768,308	-		PP_4218	0.47	+0.6
4,768,528	+		PP_4218	0.70	-0.1
4,768,528	+		PP_4218	0.70	-1.5
4,768,547	-		PP_4218	0.72	-1.0
4,768,595	-		PP_4218	0.77	+1.2
4,768,613	+		PP_4218	0.79	+1.9
4,768,613	+		PP_4218	0.79	-0.8
4,768,614	-		PP_4218	0.79	+0.3
4,768,614	-		PP_4218	0.79	+0.0
4,768,783	+				-0.5
4,768,784	-				+0.1
4,768,908	+				+0.9
4,768,909	-				-3.0
4,768,909	-				-0.4
4,769,032	-				-1.3
4,769,251	-				+0.7
4,769,251	-				+0.8
4,769,584	+				+0.0
4,769,585	-				-1.5
4,769,963	+		PP_4219	0.11	-1.5
4,769,963	+		PP_4219	0.11	-0.5
4,770,007	+		PP_4219	0.11	-1.0
4,770,007	+		PP_4219	0.11	+0.5
4,770,008	-		PP_4219	0.11	-0.6
4,770,085	+		PP_4219	0.12	+1.1
4,770,086	-		PP_4219	0.12	-2.1
4,770,086	-		PP_4219	0.12	-0.1
4,770,142	-		PP_4219	0.12	+0.3
4,770,232	+		PP_4219	0.13	+0.6
4,770,281	-		PP_4219	0.14	+1.8
4,770,330	-		PP_4219	0.14	-0.1
4,770,379	+		PP_4219	0.15	-0.2
4,770,433	+		PP_4219	0.15	+1.1
4,770,434	-		PP_4219	0.15	+0.6
4,770,458	+		PP_4219	0.15	-0.2
4,770,458	+		PP_4219	0.15	+0.3
4,770,459	-		PP_4219	0.15	+0.6
4,770,462	+		PP_4219	0.15	-0.1
4,770,462	+		PP_4219	0.15	-0.4
4,770,462	+		PP_4219	0.15	-0.5
4,770,463	-		PP_4219	0.15	-0.1
4,770,463	-		PP_4219	0.15	-0.8
4,770,463	-		PP_4219	0.15	+0.3
4,770,575	-		PP_4219	0.17	-0.2
4,770,592	+		PP_4219	0.17	+1.3
4,770,593	-		PP_4219	0.17	+0.7
4,770,593	-		PP_4219	0.17	+0.7
4,770,593	-		PP_4219	0.17	+0.6
4,770,629	-		PP_4219	0.17	+1.0
4,770,629	-		PP_4219	0.17	+1.0
4,770,629	-		PP_4219	0.17	+0.3
4,770,629	-		PP_4219	0.17	-0.9
4,770,663	+		PP_4219	0.17	+0.1
4,770,689	-		PP_4219	0.18	+0.1
4,770,894	-		PP_4219	0.20	+0.0
4,770,894	-		PP_4219	0.20	-0.9
4,770,967	+		PP_4219	0.20	-0.4
4,770,967	+		PP_4219	0.20	+0.3
4,770,967	+		PP_4219	0.20	+0.6
4,770,967	+		PP_4219	0.20	+1.8
4,770,976	+		PP_4219	0.20	-0.7
4,770,976	+		PP_4219	0.20	-2.0
4,770,976	+		PP_4219	0.20	+0.9
4,770,977	-		PP_4219	0.20	-0.1
4,771,002	+		PP_4219	0.21	-0.0
4,771,141	+		PP_4219	0.22	+1.2
4,771,142	-		PP_4219	0.22	+0.5
4,771,142	-		PP_4219	0.22	-0.0
4,771,163	-		PP_4219	0.22	-0.6
4,771,183	+		PP_4219	0.22	-1.1
4,771,184	-		PP_4219	0.22	+1.7
4,771,184	-		PP_4219	0.22	+0.9
4,771,184	-		PP_4219	0.22	-0.4
4,771,579	+		PP_4219	0.26	+0.0
4,771,579	+		PP_4219	0.26	+0.8
4,771,580	-		PP_4219	0.26	+1.7
4,771,580	-		PP_4219	0.26	+1.0
4,771,580	-		PP_4219	0.26	+1.3
4,771,580	-		PP_4219	0.26	-0.4
4,771,585	+		PP_4219	0.26	+0.1
4,771,585	+		PP_4219	0.26	+0.0
4,771,585	+		PP_4219	0.26	+0.3
4,771,585	+		PP_4219	0.26	+0.6
4,771,585	+		PP_4219	0.26	-1.9
4,771,586	-				+1.8
4,771,586	-		PP_4219	0.26	+0.2
4,771,795	+		PP_4219	0.28	-0.4
4,771,795	+		PP_4219	0.28	+0.2
4,772,236	+		PP_4219	0.32	-2.3
4,772,312	+		PP_4219	0.33	+1.5
4,772,333	+		PP_4219	0.33	+0.9
4,772,333	+		PP_4219	0.33	+0.2
4,772,333	+		PP_4219	0.33	-0.7
4,772,333	+		PP_4219	0.33	+0.5
4,772,333	+		PP_4219	0.33	-2.0
4,772,333	+		PP_4219	0.33	+1.2
4,772,333	+		PP_4219	0.33	+0.3
4,772,334	-		PP_4219	0.33	+1.1
4,772,334	-		PP_4219	0.33	-0.1
4,772,334	-		PP_4219	0.33	+0.6
4,772,334	-		PP_4219	0.33	-1.0
4,772,334	-		PP_4219	0.33	-0.8
4,772,334	-		PP_4219	0.33	+0.4
4,772,334	-		PP_4219	0.33	-0.4
4,772,334	-		PP_4219	0.33	+1.5
4,772,334	-		PP_4219	0.33	+1.1
4,772,341	+		PP_4219	0.33	+0.5
4,772,342	-		PP_4219	0.33	+0.6
4,772,342	-		PP_4219	0.33	-1.0
4,772,527	+		PP_4219	0.35	-0.2
4,772,527	+		PP_4219	0.35	-1.1
4,772,527	+		PP_4219	0.35	+2.1
4,772,527	+		PP_4219	0.35	-0.9
4,772,528	-		PP_4219	0.35	-0.3
4,772,575	-		PP_4219	0.36	-0.9
4,772,575	-		PP_4219	0.36	+1.0
4,772,575	-				-0.5
4,772,575	-		PP_4219	0.36	+1.0
4,772,662	+		PP_4219	0.37	-0.8
4,772,663	-		PP_4219	0.37	+0.6
4,772,663	-		PP_4219	0.37	-0.3
4,772,663	-		PP_4219	0.37	+1.3
4,772,663	-		PP_4219	0.37	+0.3
4,772,731	+		PP_4219	0.37	+1.9
4,772,732	-		PP_4219	0.37	+0.7
4,772,732	-		PP_4219	0.37	+1.1
4,772,975	+		PP_4219	0.40	+0.0
4,772,976	-		PP_4219	0.40	+0.2
4,773,052	+		PP_4219	0.40	+0.1
4,773,052	+		PP_4219	0.40	+0.0
4,773,052	+		PP_4219	0.40	-0.6
4,773,052	+		PP_4219	0.40	+0.0
4,773,053	-		PP_4219	0.40	+0.1
4,773,053	-		PP_4219	0.40	+0.3
4,773,053	-		PP_4219	0.40	+0.9
4,773,053	-		PP_4219	0.40	-0.5
4,773,053	-		PP_4219	0.40	-0.7
4,773,164	-		PP_4219	0.41	+0.9
4,773,164	-		PP_4219	0.41	+1.5
4,773,265	+		PP_4219	0.42	+0.6
4,773,265	+		PP_4219	0.42	+0.4
4,773,532	+		PP_4219	0.45	+0.3
4,773,532	+		PP_4219	0.45	+0.9
4,773,562	+		PP_4219	0.45	+1.4
4,773,562	+		PP_4219	0.45	-0.9
4,773,563	-		PP_4219	0.45	+0.1
4,773,563	-		PP_4219	0.45	+0.5
4,773,719	-		PP_4219	0.47	+0.9
4,773,719	-		PP_4219	0.47	+1.3
4,773,727	+		PP_4219	0.47	-1.9
4,773,727	+		PP_4219	0.47	+0.6
4,773,728	-		PP_4219	0.47	+1.8
4,773,728	-		PP_4219	0.47	-0.5
4,774,141	+		PP_4219	0.51	-0.1
4,774,141	+		PP_4219	0.51	+0.8
4,774,141	+		PP_4219	0.51	+0.7
4,774,142	-		PP_4219	0.51	+0.0
4,774,142	-		PP_4219	0.51	+0.9
4,774,150	+		PP_4219	0.51	+1.2
4,774,150	+		PP_4219	0.51	+0.3
4,774,151	-		PP_4219	0.51	+0.5
4,774,151	-		PP_4219	0.51	-0.1
4,774,151	-		PP_4219	0.51	-0.0
4,774,151	-		PP_4219	0.51	+0.3
4,774,238	+		PP_4219	0.52	+2.0
4,774,238	+				+1.5
4,774,238	+		PP_4219	0.52	+1.9
4,774,239	-		PP_4219	0.52	+0.4
4,774,242	+		PP_4219	0.52	+0.5
4,774,243	-		PP_4219	0.52	+1.2
4,774,321	+		PP_4219	0.53	+3.2
4,774,359	+		PP_4219	0.53	-0.7
4,774,359	+		PP_4219	0.53	+0.9
4,774,360	-		PP_4219	0.53	+0.9
4,774,363	+		PP_4219	0.53	+0.9
4,774,363	+		PP_4219	0.53	-3.0
4,774,364	-		PP_4219	0.53	-0.0
4,774,364	-		PP_4219	0.53	+0.8
4,774,364	-		PP_4219	0.53	+0.4
4,774,364	-		PP_4219	0.53	+0.9
4,774,399	-		PP_4219	0.53	+0.4
4,774,399	-		PP_4219	0.53	+1.2
4,774,510	+		PP_4219	0.54	+0.6
4,774,511	-		PP_4219	0.54	-0.1
4,774,511	-		PP_4219	0.54	+1.4
4,774,514	+		PP_4219	0.54	+0.6
4,774,514	+		PP_4219	0.54	+0.3
4,774,514	+		PP_4219	0.54	+1.0
4,774,514	+		PP_4219	0.54	+1.2
4,774,515	-		PP_4219	0.54	+1.8
4,774,515	-		PP_4219	0.54	-0.4
4,774,515	-		PP_4219	0.54	-0.5
4,774,763	-		PP_4219	0.57	+0.1
4,774,763	-		PP_4219	0.57	+0.9
4,774,781	+		PP_4219	0.57	+0.9
4,774,782	-		PP_4219	0.57	-0.2
4,775,396	-		PP_4219	0.63	-0.7
4,775,461	+		PP_4219	0.63	+0.8
4,775,461	+		PP_4219	0.63	+0.8
4,775,462	-		PP_4219	0.63	+0.4
4,775,506	+		PP_4219	0.64	-0.1
4,775,515	+		PP_4219	0.64	-0.1
4,775,515	+		PP_4219	0.64	+0.2
4,775,891	-		PP_4219	0.68	+1.6
4,775,923	-		PP_4219	0.68	+0.3
4,775,945	-		PP_4219	0.68	+0.6
4,776,349	+		PP_4219	0.72	+0.6
4,776,349	+		PP_4219	0.72	+0.6
4,776,349	+		PP_4219	0.72	-2.6
4,776,350	-		PP_4219	0.72	+2.1
4,776,350	-		PP_4219	0.72	+0.2
4,776,350	-		PP_4219	0.72	+0.6
4,776,350	-		PP_4219	0.72	+0.9
4,776,350	-		PP_4219	0.72	-0.3
4,776,350	-		PP_4219	0.72	-0.6
4,776,449	+		PP_4219	0.73	-0.0
4,776,450	-		PP_4219	0.73	+0.3
4,776,451	+		PP_4219	0.73	+0.9
4,776,451	+		PP_4219	0.73	-0.7
4,776,451	+		PP_4219	0.73	-1.1
4,776,451	+		PP_4219	0.73	+0.8
4,776,452	-		PP_4219	0.73	-0.5
4,776,452	-		PP_4219	0.73	+0.6
4,776,452	-		PP_4219	0.73	+1.8
4,776,598	+		PP_4219	0.74	+0.0
4,776,599	-		PP_4219	0.74	+0.4
4,776,599	-				+0.5
4,776,892	+		PP_4219	0.77	-0.1
4,777,148	-		PP_4219	0.80	-1.2
4,777,306	+		PP_4219	0.81	-1.7
4,777,306	+		PP_4219	0.81	-0.5
4,777,306	+		PP_4219	0.81	+1.2
4,777,315	+		PP_4219	0.81	+0.1
4,777,373	-		PP_4219	0.82	-0.7
4,777,487	-		PP_4219	0.83	+0.4
4,777,528	+		PP_4219	0.83	+0.8
4,777,528	+		PP_4219	0.83	+1.0
4,777,529	-		PP_4219	0.83	+0.4
4,777,675	+		PP_4219	0.85	+0.4
4,777,942	+		PP_4219	0.87	+0.7
4,777,942	+		PP_4219	0.87	+0.6
4,777,942	+		PP_4219	0.87	+0.3
4,777,943	-		PP_4219	0.87	-0.2
4,777,943	-		PP_4219	0.87	-1.1
4,778,259	+				+0.8
4,778,259	+				+0.5
4,778,260	-				+1.3
4,778,406	+				-0.0
4,778,407	-				+0.1
4,778,407	-				+1.0
4,778,407	-				+1.0
4,778,620	+				-1.2
4,778,683	+				-1.2
4,778,738	+				-2.0
4,778,738	+				+1.4
4,778,739	-				+1.1
4,778,739	-				+0.3
4,778,739	-				+0.7
4,778,739	-				-0.8
4,779,067	+				+0.4
4,779,068	-				-0.7
4,779,068	-				-1.1
4,779,068	-				-1.7
4,779,068	-				-0.8
4,779,122	-				+1.2
4,779,381	-				+1.0
4,779,381	-				-0.7
4,779,753	-				-1.4
4,779,863	+				+1.0
4,779,864	-				+0.4
4,779,864	-				+1.1
4,779,864	-				-0.9
4,780,048	+				+0.4
4,780,048	+				-1.6
4,780,049	-				+1.8
4,780,094	+				+0.9
4,780,095	-				+0.4
4,780,095	-				-0.7
4,780,237	+		PP_4220	0.10	+0.9